Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0722 ATGGATAAATCATCCAACTTTGATGAAAATTCTGATGTGGGTTATCACCCATCACCTTCAAATACTCCTGCTTTTTCCCCAATGAGTGGAGATTCTTTTGCATATTGCCAAACCTGGACAAGCTCAGAGTCAGAAACTGTAGATGAGAGCAGCTATGCCAGTGAGCCTTCACCTTCTCGGTGGAGGGCTAAACAGGATGTTCTTTCAAAGCTAGGAATGAAGTTGCGCAAGCACTCAATGGATGATAAACTTGGTGGCTGTGAGGATTCAGCCGAGCTTGAAATGATGAAGGAAAGATTTGCAAAGCTTCTGCTGGGAGAAGACATGTCTGGTAGTGGGAAAGGTGTTTGCACTGCAGTTACAATCTCAAATGCCGTTACCAATCTCTATGCAACCGTATTTGGACAAAGTTTAAAGTTGGAACCACTAAAGCCTGAGAAGAAGGCTATGTGGAAAAGGGAGATGAAGGTTCTCTTATCAGTCTGTGACTACATACAAGAATTTGCTCCAACTGCACAATATTTAGAAGATGGCACAATTGTGGAGATGATGAAAAGCAGGCCAAGGTCAGACATCTATATCAACCTCCCTGCACTGCAGAAGCTTGACACAATGCTCATAGAAATATTAGATACTTTCCAGGATACTGAATTTTGGTATGCAGAGAACATACCAGAGAATTCAAGTCGTTTACGCGGGGCCTCATTTCGAAAAATTGTTCCAAGGAAAGATGAGAAATGGTGGTTGCCAGTTCCTTGTGTTCTTCCTGGTGGCCTCTCTGACAAGTCAAGAAAGCACCTGATAGAGAAAAGGGATTGTGCTAATCAAATTCATAAGGCAGCCATGGCAATAAACAGCAATGTTCTTGCAGAAATAGATATCCCAGAAACATATATAGATAATCTTCCCAAGctgAAATTCTATTGCCAAGTGATTGAGGATTCCATTAAATGTGACCCCATAAAGCAAATGTCTTGGAATTTATCATCAAATTTCATAAGCCTTTTATGGAAGCCAATAATAGCAGCTGAGTCTTGTAGAAAACGGGATGATATAGTTTCATTTAAGAGTGGAAGATCAAGTCTAGGGGACTCAATTTACCACTACATGTACAATGCAGACAAGTTCTCACCTGAACAACTTCTTGACTGTCTCAAAATAAGTTCTGAACATGAAGCACTTGAGCTAGCAGACAGGGTTGAATCATCAATGTACACGTGGAGACGTAAAGCTTGTCTGAGCCATACAAAGTCATCATGGAGCAAAGTAAAGGATCTCATGGATGATACagattataaggacaaaaactaCACCTTAGCTGAGAGAGCTGAGTCTTTACTGCTATGCCTGAAGCAAAGATATCCTGAACTTTCACAAACTTCTTTGGATACATGCAAGATCCAATACAACCGGGATGTAGGGAAAGCAGTACTAGAGAGTTATTCAAGAGTTTTGGAAGGCCTAGCATTCAACATTGTTGCATGGATTGAAGATGTTCTTTATGTAGATAAATCAATGAGGAATCGAGATGTCTAG 1536 0.4017 MDKSSNFDENSDVGYHPSPSNTPAFSPMSGDSFAYCQTWTSSESETVDESSYASEPSPSRWRAKQDVLSKLGMKLRKHSMDDKLGGCEDSAELEMMKERFAKLLLGEDMSGSGKGVCTAVTISNAVTNLYATVFGQSLKLEPLKPEKKAMWKREMKVLLSVCDYIQEFAPTAQYLEDGTIVEMMKSRPRSDIYINLPALQKLDTMLIEILDTFQDTEFWYAENIPENSSRLRGASFRKIVPRKDEKWWLPVPCVLPGGLSDKSRKHLIEKRDCANQIHKAAMAINSNVLAEIDIPETYIDNLPKLKFYCQVIEDSIKCDPIKQMSWNLSSNFISLLWKPIIAAESCRKRDDIVSFKSGRSSLGDSIYHYMYNADKFSPEQLLDCLKISSEHEALELADRVESSMYTWRRKACLSHTKSSWSKVKDLMDDTDYKDKNYTLAERAESLLLCLKQRYPELSQTSLDTCKIQYNRDVGKAVLESYSRVLEGLAFNIVAWIEDVLYVDKSMRNRDV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0722 511 Gene3D PRONE domain, subdomain 1 470 504 - -
Ssu3g0722 511 Gene3D PRONE domain, subdomain 1 87 326 - -
Ssu3g0722 511 ProSiteProfiles PRONE domain profile. 83 511 IPR005512 GO:0005085
Ssu3g0722 511 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 511 IPR038937 GO:0005085
Ssu3g0722 511 PANTHER PRONE DOMAIN-CONTAINING PROTEIN-RELATED 1 511 - -
Ssu3g0722 511 MobiDBLite consensus disorder prediction 10 29 - -
Ssu3g0722 511 MobiDBLite consensus disorder prediction 1 29 - -
Ssu3g0722 511 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 356 507 IPR005512 GO:0005085
Ssu3g0722 511 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 92 305 IPR005512 GO:0005085
Ssu3g0722 511 Gene3D PRONE domain, subdomain 2 356 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0722 Ssu-Chr3 17426085 17429227 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0722 - - gmx:100806086 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0722 3 17426085 17429227 Ssu3g0722 3 17426085 17429227 ECH
Ssu3g0722 3 17426085 17429227 Ssu4g2788 4 71098006 71100713 PCT