Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2782 ATGCTTATATCCATTGGCTTGTCAAGCGCTAAAACCAAAGAAGAAACAGATTCGAATTGCTCTGCGAAAATGGAACACGACGAAGCGTTTGAGTTTCTCGGAGGCGTTCCGCTTCTGCAGAGGCTTCCGAGCTCGTCTGTGAGGAAGATATCTCAATTTGTGGTTGTCAAACACTGTGAGCCAGGAGAGTATGTTGTTCGTGAGGGTGAACCGGGAGATGGCGTGTACTTCATATTGGATGGAGAGGCCGAGGTTGTTGGATCTGTTAGCGCCAATGATGAAAATCGTCCAGAGTTCCAATTGAAAAGATATGACTACTTTGGTTATGGTTTGTCAAACACAGTTCACCAGGCAGATGTTGTTGCTTTGTCTAAGCTGAGATGCTTAGTGCTGCCCCACGAGCACTCAACACTGCTGCAGCCAAAGTCTATCTGGAGAGCAGAAAATTCTCTTGAGACATGCTCACCTGTGGAGAATATATTGCACTTGGAACCCATAGAGGTAGATATTTTCGAAGGAATTACCCTTCCAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGGCAGATGATTGGACAGGCACTGGCCGCGGCATCAAAATCTGTTGACTGTCTTAAGGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCAGGGGATTTACACATGCCAATTATATATCAAGTTCACCGTATCCGTGATGGAAAGAGCTTTGCTACAAGGACAGTGGATGGAATTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCAAAAAGAAGAATCAGGGATGGACCACCAGGAAGTGGCTATACCATCTGTCCCAGCTCCAGATAAGCTTCTGCCAATGGAAGAACTACGGGAGAGACGTCTTACTGACCCTCGTTTACCGATAACCTACCGGAACAAAGTAGCTACATCTCCATTCATCCCCTGGCCCATAGAGATACGGTTCTGTGAATATGAAATTGCAACAAATCAGACAAAAACTCCTCCCAGTTTGAGATACTGGTTTAGAGCAAAGGGAAAACTTTCAGATGATCAAGCCTTGCATAGGTGTGTGGTGGCATATGCTTCAGATCTTATATTTCTTCAAGTAAGTTTGAATCCCCACCGTGAGAAGGGTTTCAGAACACGTTCTGTTAGTCTGGACCACTCTATGTGGTTTCACCGATCCTTAAGAGCTGATGACTGGGTGCTATTTGTGATCTTTACTCCTAGTGCTTATAATGCACGTGTCTTTGTTACCGGCCAAATGTTCAATCAGAAGGGAGAGCTTCTTGTATCATTGGTTCAAGAAGGACTGGCCAGGAAAATTAGTTCTGGAAATTCAGCCATTAAATCTAAGTTGTGA 1359 0.4422 MLISIGLSSAKTKEETDSNCSAKMEHDEAFEFLGGVPLLQRLPSSSVRKISQFVVVKHCEPGEYVVREGEPGDGVYFILDGEAEVVGSVSANDENRPEFQLKRYDYFGYGLSNTVHQADVVALSKLRCLVLPHEHSTLLQPKSIWRAENSLETCSPVENILHLEPIEVDIFEGITLPDAPRFGKVFGGQMIGQALAAASKSVDCLKVVHSLHAYFILAGDLHMPIIYQVHRIRDGKSFATRTVDGIQKGNVIFTLLASFQKEESGMDHQEVAIPSVPAPDKLLPMEELRERRLTDPRLPITYRNKVATSPFIPWPIEIRFCEYEIATNQTKTPPSLRYWFRAKGKLSDDQALHRCVVAYASDLIFLQVSLNPHREKGFRTRSVSLDHSMWFHRSLRADDWVLFVIFTPSAYNARVFVTGQMFNQKGELLVSLVQEGLARKISSGNSAIKSKL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2782 452 CDD CAP_ED 38 135 IPR000595 -
Ssu4g2782 452 Gene3D - 152 441 IPR042171 -
Ssu4g2782 452 PANTHER ACYL-COA THIOESTERASE 74 452 IPR003703 GO:0006637|GO:0047617
Ssu4g2782 452 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 65 81 IPR018488 -
Ssu4g2782 452 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g2782 452 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 153 265 IPR029069 -
Ssu4g2782 452 Pfam Cyclic nucleotide-binding domain 57 134 IPR000595 -
Ssu4g2782 452 Gene3D Jelly Rolls 21 149 IPR014710 -
Ssu4g2782 452 SMART cnmp_10 38 155 IPR000595 -
Ssu4g2782 452 TIGRFAM tesB: acyl-CoA thioesterase II 161 439 IPR003703 GO:0006637|GO:0047617
Ssu4g2782 452 CDD Thioesterase_II_repeat2 169 261 - -
Ssu4g2782 452 PANTHER ACYL-COA THIOESTERASE 74 452 - -
Ssu4g2782 452 ProSiteProfiles cAMP/cGMP binding motif profile. 38 108 IPR000595 -
Ssu4g2782 452 SUPERFAMILY cAMP-binding domain-like 28 135 IPR018490 -
Ssu4g2782 452 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 271 440 IPR029069 -
Ssu4g2782 452 CDD Thioesterase_II_repeat1 336 437 - -
Ssu4g2782 452 Pfam Thioesterase-like superfamily 184 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2782 Ssu-Chr4 70882215 70893527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2782 24 452 Acyl Lipid Metabolism Gene Families AT1G01710 65.501 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2782 K01068 - gmx:100797680 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2782 4 70882215 70893527 Ssu4g2782 4 70882215 70893527 ECH
Ssu3g0738 3 17794601 17800316 Ssu4g2782 4 70882215 70893527 PCT