Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0738 ATGAATTCTTTTGTAGAGCCAGGAAAGTATGTTGTTCGTGAGGGTGAACGTGGAGACGGTCTTTACTTCATTTGGGACGGAGAGGCTGAGGTTGTTGGCTCTCTTAGCACCGATGAAGATAATCATCCAGAGTTTCAATTGAAAAGATATgattattttggttttgGCTTATCAAATGCAGTTCACCCTGCTGATGTCGTAGCTTTGACAAAGCTTTCTTGCTTGGTGCTGCCCCATGAGCACTCAGCATTGCTGCAGCCAAAGTCTATCTGGAGTGCAGAAAAATCTCTTGATACATGCTCACCTGTGGAACATATATTGCATTTGGAACCTATAGAGGTAGATATCTTCCGAGGAATCACCCCTCCAGATGCTCCAAAATTTGGGAAGGTATTTGGGGGACAAATAGTTGGACAGGCACTGGCTGCGGCATCAAAATCTGTTGATTGTCTCAAAGTTGTTCATAGCTTGCATGCCTATTTTCTTCTTGTGGGGGATTTTAACAtaCCAATTATATATCAAGTTAATCGTCTCCGTGATGGGAAGAGTTTTGCTACAAGGAAAGTGGATGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCAGAAGGAAGAATTAGGGTTTCACCACCAGGAAGTGTCTATCCCGTCAGTCCCTGCACCAGATAAGCTTTTATCGATGGAAGAGCTACGGGAGCAACGTCTTACTGACCCTCGTCTTCCAAGAACTTACCGGAACAAGGTTGCTGCAACTGAATTCATTCCCTGGCCCATAGAGATACGGTTCTGTGAACCTAAAACTTCGACAAATCAGACCAAGTCTCCTCCTAGTTTGAGATACTGGTTTAGAGCAAAGGGAAAACTTTCGGATGATCAGGCCTTGCATAGTTGTGTGGTAGCATATGCTTCAGATCTAATCTTTCTTCAAGTGAGTTTGAACCCCCACCGTAGGAAGGGCATGAAGCCACGTGCTGTGAGTCTGGACCACTCCATGTGGTTTCACAGACCTTTAAGAGCTGATGACTGGGTACTATTTGTGATCTTTAGCCCTAGTGCCTCTAATGCCCGCGGCTATGTCTCCGGCCAAATGTTCAATCAAAAGGGAGAGGTAACGGGTCATTTGTTCTCATCACTTTATCTAGTACCACACTCCTTGTTGCAGTGCAATTCTGAAAAAGCTTACACCCACCCCACCCCCTTAAAGAAAGTGTATCAAGTAAGAGATCAGAGgagcaaattttaa 1254 0.4354 MNSFVEPGKYVVREGERGDGLYFIWDGEAEVVGSLSTDEDNHPEFQLKRYDYFGFGLSNAVHPADVVALTKLSCLVLPHEHSALLQPKSIWSAEKSLDTCSPVEHILHLEPIEVDIFRGITPPDAPKFGKVFGGQIVGQALAAASKSVDCLKVVHSLHAYFLLVGDFNIPIIYQVNRLRDGKSFATRKVDAIQKGNVIFTLLASFQKEELGFHHQEVSIPSVPAPDKLLSMEELREQRLTDPRLPRTYRNKVAATEFIPWPIEIRFCEPKTSTNQTKSPPSLRYWFRAKGKLSDDQALHSCVVAYASDLIFLQVSLNPHRRKGMKPRAVSLDHSMWFHRPLRADDWVLFVIFSPSASNARGYVSGQMFNQKGEVTGHLFSSLYLVPHSLLQCNSEKAYTHPTPLKKVYQVRDQRSKF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0738 417 SUPERFAMILY cAMP-binding domain-like 5 81 IPR018490 -
Ssu3g0738 417 PANTHER ACYL-COA THIOESTERASE 29 374 - -
Ssu3g0738 417 Gene3D Jelly Rolls 2 92 IPR014710 -
Ssu3g0738 417 CDD Thioesterase_II_repeat2 115 207 - -
Ssu3g0738 417 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 217 374 IPR029069 -
Ssu3g0738 417 CDD Thioesterase_II_repeat1 282 373 - -
Ssu3g0738 417 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 100 209 IPR029069 -
Ssu3g0738 417 Pfam Thioesterase-like superfamily 129 374 - -
Ssu3g0738 417 Pfam Cyclic nucleotide-binding domain 5 80 IPR000595 -
Ssu3g0738 417 PANTHER ACYL-COA THIOESTERASE 29 374 IPR003703 GO:0006637|GO:0047617
Ssu3g0738 417 ProSiteProfiles cAMP/cGMP binding motif profile. 1 54 IPR000595 -
Ssu3g0738 417 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 11 27 IPR018488 -
Ssu3g0738 417 Gene3D - 98 379 IPR042171 -
Ssu3g0738 417 CDD CAP_ED 4 81 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0738 Ssu-Chr3 17794601 17800316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0738 8 378 Acyl Lipid Metabolism Gene Families AT1G01710 70.350 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0738 K01068 - gmx:100813197 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0738 3 17794601 17800316 Ssu3g0738 3 17794601 17800316 ECH
Ssu3g0738 3 17794601 17800316 Ssu4g2782 4 70882215 70893527 PCT