Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2745 ATGGGTATGGCAGATGCAAAAGAAAGATATGCTGTTGTCACAGGTGCAAACAAAGGGATAGGATTGGAGACTGTTAAAGGGTTGGCCTCAAATGGAATCAAAGTGGTGCTCACAGCCAGGGATGAGAAGAGAGGTTATCAAGCTGTTGAGGAATTGAAAAAGTGTGGTTTCTCTGGCCTTGTGGTGTTTCACCAGCTTGATGTGACTGACTCTGCTAGTATTGCGACTTTGGTTGAGTTTGTTAAGAACCACTTTGGGAAACTTGATATATTGGTGAACAATGCAGGAATCAATGGGTTCAACACAGATGGCATGGTGCCATCCAAAATTAACTGGAAGGAGCTGCCTCAAACTCATGAGATGGCTGAAAAATGCCTAAGAACAAACTACTATGGTGCTAAGAAAACAACTGAGGCATTTCTTCCCCTTCTTCAGTTATCCAATTTACCCATGATTGTTAATGTTTCCTCCGAAGCAGGACTATTAAAGTACATATCAAACGAATGGGCCAGGAGGGTGTTCGATGACACTGAAAATCTTACTGAAGAGCTAATAGACAAGGTGCTGAAGGAGTATATGAAAGACTTAAAAGAAGGTTCACTAGAAAAAAAGGGATGGCCAACCTACCTATCTTCATATATGGTCTCAAAAGCAGCCATGAATTCATACACAAGGCTTCTGGCCTATAAGCACCCAAGTTTGTGCATCAATTGTGTATGTCCTGGTTTTGTTAAAACAGACATTAACCGAAACACTGGCATCTTATCTGTTGAAAATGGTGCTGCTAGTGTTGTGAGATTAGCACTGTTGCCTAATGGTTCCCCTTCTGGCCACTTCTTTGCTAGACAAGAAGTGTCAAGCTTTTGA 867 0.4175 MGMADAKERYAVVTGANKGIGLETVKGLASNGIKVVLTARDEKRGYQAVEELKKCGFSGLVVFHQLDVTDSASIATLVEFVKNHFGKLDILVNNAGINGFNTDGMVPSKINWKELPQTHEMAEKCLRTNYYGAKKTTEAFLPLLQLSNLPMIVNVSSEAGLLKYISNEWARRVFDDTENLTEELIDKVLKEYMKDLKEGSLEKKGWPTYLSSYMVSKAAMNSYTRLLAYKHPSLCINCVCPGFVKTDINRNTGILSVENGAASVVRLALLPNGSPSGHFFARQEVSSF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2745 288 CDD carb_red_PTCR-like_SDR_c 9 288 IPR045313 GO:0016616
Ssu4g2745 288 Gene3D - 3 288 - -
Ssu4g2745 288 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 288 - -
Ssu4g2745 288 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 274 IPR036291 -
Ssu4g2745 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 IPR002347 -
Ssu4g2745 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 158 IPR002347 -
Ssu4g2745 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 213 232 IPR002347 -
Ssu4g2745 288 Pfam short chain dehydrogenase 10 165 IPR002347 -
Ssu4g2745 288 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Ssu4g2745 288 PRINTS Glucose/ribitol dehydrogenase family signature 86 97 IPR002347 -
Ssu4g2745 288 PRINTS Glucose/ribitol dehydrogenase family signature 144 160 IPR002347 -
Ssu4g2745 288 PRINTS Glucose/ribitol dehydrogenase family signature 275 288 IPR002347 -
Ssu4g2745 288 PRINTS Glucose/ribitol dehydrogenase family signature 232 249 IPR002347 -
Ssu4g2745 288 PRINTS Glucose/ribitol dehydrogenase family signature 213 232 IPR002347 -
Ssu4g2745 288 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 2 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2745 Ssu-Chr4 70218561 70220752 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2745 7 161 Acyl Lipid Metabolism Gene Families AT3G46170 31.013 8.05e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2745 K15095 - gmx:111064653 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2745 4 70218561 70220752 Ssu4g2745 4 70218561 70220752 ECH
Ssu3g0768 3 18321741 18339860 Ssu4g2745 4 70218561 70220752 PCT