Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0768 ATGGGGGAAGAAGCGAAAAGGTATGCTGTTGTGACAGGAGCAAATAAAGGGATTGGTTTTGGGATGTGTAAGAAGTTGGCTTCAAGTGGGTTTGTGGTGGTGCTAACTGCTAGAGATGAGGAGAGGGGCTTGAAAGCTGTTGAAAAACTGAAAGAGTTTGGTCTCTCAGACCTTCTGGTTTTTCACCAGCTTGATGTGGATGACCCTGCTACTGTTGCTACCTtagttaatttcattaaaacccaatttgggaaacttgatatcttgAGAAACGGTGAACAAATTAATTGGAATGAAGTAGGGTATCAAACTAATGAGTTAGCTGAAAAGTGTTTGGAAACAAACTTCTATGGTGTAGAAAGGGTAACTGAAGCCCTTGTTCCCCTTCTCCAGCTATCCACTTCACCAAGAATTATCAATATTTCCTCTAGAGCCGGGCTCTTGAAGGTACATTTAGGGTACAGCTCttctatagaaaataaatttattgtagttCAATTGGTTTCTAATGGTATCACAGTGGTGCTAACAGCAAGGGATGAGAAAAACGGTATTGAAGCTGTTGAAAAACTGAAAGAGTGTGGTCTGTCAGACCAAGTGGTTTTTCATCAGCTTGATGTGACTGACCCTAAAAGCATTGAATCCCTTGCAAATTTCATCAGAACCCAGTTTGGAAAACTTGATATCTTGGTGAATAATGCAGGAATTCATGGAGCAGATGTTGACCCTGACGCCTTTTCAGCTGCAGTTGCAGCTGGGGAAAAATATGCTAATGTTGATtggaaaaaaatcataactcaAAATTATGAATCTGCGGAAGCAGGCGTTAGAACAAACTACTATGGAGCCAAGTTAATGTGTGAAGCTTTTATTCCCCTTCTAGAATTGTCAGACTCGCCAAGGATTGTTAATGTTTCCTCCTCCATGGGGAAGTTGGAGGAATCAAGTGCCGTAATTTGGgcacaaaatattttgtttccaTCAGGATTGATGAGCAATATGAATAACTTTCAAGTTGTGACAACCTTACCCATTGTGAGGAAAATGGGCCAAAGAGAGGTTTAG 1065 0.3784 MGEEAKRYAVVTGANKGIGFGMCKKLASSGFVVVLTARDEERGLKAVEKLKEFGLSDLLVFHQLDVDDPATVATLVNFIKTQFGKLDILRNGEQINWNEVGYQTNELAEKCLETNFYGVERVTEALVPLLQLSTSPRIINISSRAGLLKVHLGYSSSIENKFIVVQLVSNGITVVLTARDEKNGIEAVEKLKECGLSDQVVFHQLDVTDPKSIESLANFIRTQFGKLDILVNNAGIHGADVDPDAFSAAVAAGEKYANVDWKKIITQNYESAEAGVRTNYYGAKLMCEAFIPLLELSDSPRIVNVSSSMGKLEESSAVIWAQNILFPSGLMSNMNNFQVVTTLPIVRKMGQREV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0768 354 Gene3D - 163 338 - -
Ssu3g0768 354 Gene3D - 6 162 - -
Ssu3g0768 354 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 92 149 - -
Ssu3g0768 354 Pfam short chain dehydrogenase 162 314 IPR002347 -
Ssu3g0768 354 Pfam short chain dehydrogenase 8 151 IPR002347 -
Ssu3g0768 354 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Ssu3g0768 354 PRINTS Glucose/ribitol dehydrogenase family signature 130 146 IPR002347 -
Ssu3g0768 354 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Ssu3g0768 354 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 163 311 IPR036291 -
Ssu3g0768 354 PANTHER SALUTARIDINE REDUCTASE-LIKE 92 149 - -
Ssu3g0768 354 PANTHER SALUTARIDINE REDUCTASE-LIKE 1 91 - -
Ssu3g0768 354 PANTHER SALUTARIDINE REDUCTASE-LIKE 163 325 - -
Ssu3g0768 354 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 91 - -
Ssu3g0768 354 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 163 325 - -
Ssu3g0768 354 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 149 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0768 Ssu-Chr3 18321741 18339860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0768 3 157 Acyl Lipid Metabolism Gene Families AT1G63380 29.268 3.32e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0768 K15095 - gmx:100789626 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0768 3 18321741 18339860 Ssu3g0768 3 18321741 18339860 ECH
Ssu3g0768 3 18321741 18339860 Ssu4g2745 4 70218561 70220752 PCT