Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2648 ATGGGGGTGTTATGCGGCATCGCATTGATGGCTGGATGGGCGCGCATGATGAGGTACCGAAGCGCCAAGCGAATTGCAAAGGCAGCTGACATTAAACTCCTTGCATCCCTTAATAGAGatgatttaaagaaaatttgtgGCGATAATTTGCCTGAGTGGATATCTTTTCCTGTATATGAACAGGTGAAATGGCTAAACAAGGAACTGACCAAACTTTGGCCATTTGTGGCAGAAGCAGCAACAATGGTGATCAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAATGTAGCCCCGAAAATTGAAGGTATTCGTGTTCAGAGCCTTACCAAAGGTCAAATCATAATGGACATTGATTTCCGCTGGGGTGGTGATCCTAGTATTATTTTGGCTGTTGAAGCTGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTACAGGTTTTCACCATTATTCGTGTTATATTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAGCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGATGATACTGTGAACTCAATTGTTATTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGTATTCCTGTTGATATCAGTGAACTGGAGCTTAAACCCCAGGGAAAACTTGCACTGACCATAGTGAAAGCaactaatttaaagaatatgGAAATGATTGGAAAGTCAGATCCTTATGTAGTCGTGTATATTCGACCATTATTTAAGTATAAAACCAAGGTTGTTGATAACAACTTGAATCCTACTTGGGATGAGAAATTTGAGTTGATTGCAGAAGACAAGGAGACCCAATCACTCACTCTCGAGGTTCTTGATAAAGACATTGGACAAGATAAGCGATTGGGAATAGCACAATTACCCCTTGTTGATCTGGAAACACAAACTGAAAAGGAGATTGAATTGAGGCTGCTGTCATCACTTGACACACTGAAGGTGAAAGATAAGAAGGATCGAGGAACCTTGACAATAAAGGTCCTGTACTATCAGTTTAACAAGGAAGAGCAGCTGGATGCGCTAGAAGCAGAAAAAAAGATActagaagaaaggaagaaactGAAAGAAGCCGGAGTCATAGGAAGCACAATGGATGCACTAGATGGAGCAGTATCAGTGGTAGGGTCTGGTGTTGGACTGGTTGGTACTGGCGTTGTGGCCGGAGCCGGGCTTGTGGGAAGTGGCGTTGTCGCCGGTGCTGGGCTTGTGGGAAGTGGCATTGGTGCTGGAGCTGGGCTTGTTGGGAGTGGTCTTGGAGCCTTTGGTAGTGGACTGAGCAAGGCAGGGAAGTTCATGGGCAGGACAATCACAGGTAGCTCTAGAAAGAGTGGTTCTTCAACTCCGGTCAATAATGCACAGGAGAATGGTGGTGGTGCAAAGCCTCTTTGA 1545 0.4337 MGVLCGIALMAGWARMMRYRSAKRIAKAADIKLLASLNRDDLKKICGDNLPEWISFPVYEQVKWLNKELTKLWPFVAEAATMVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNSIVIDMLQWPHRIVVPLGGIPVDISELELKPQGKLALTIVKATNLKNMEMIGKSDPYVVVYIRPLFKYKTKVVDNNLNPTWDEKFELIAEDKETQSLTLEVLDKDIGQDKRLGIAQLPLVDLETQTEKEIELRLLSSLDTLKVKDKKDRGTLTIKVLYYQFNKEEQLDALEAEKKILEERKKLKEAGVIGSTMDALDGAVSVVGSGVGLVGTGVVAGAGLVGSGVVAGAGLVGSGIGAGAGLVGSGLGAFGSGLSKAGKFMGRTITGSSRKSGSSTPVNNAQENGGGAKPL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2648 514 Pfam C2 domain 256 352 IPR000008 -
Ssu4g2648 514 Gene3D C2 domain 251 410 IPR035892 -
Ssu4g2648 514 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 254 384 IPR035892 -
Ssu4g2648 514 SMART C2_3c 257 354 IPR000008 -
Ssu4g2648 514 MobiDBLite consensus disorder prediction 488 506 - -
Ssu4g2648 514 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 509 - -
Ssu4g2648 514 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 58 241 IPR031468 GO:0008289
Ssu4g2648 514 ProSiteProfiles C2 domain profile. 239 357 IPR000008 -
Ssu4g2648 514 MobiDBLite consensus disorder prediction 488 514 - -
Ssu4g2648 514 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 509 IPR045050 GO:0008289
Ssu4g2648 514 CDD C2 258 352 - -
Ssu4g2648 514 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 60 240 IPR039010 -
Ssu4g2648 514 Coils Coil 383 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2648 Ssu-Chr4 67399420 67413128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2648 252 348 Lipid Metabolism Gene Families AT3G61300 32.990 1.83e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2648 - - gmx:100777838 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0853 3 20792242 20803273 Ssu4g2648 4 67399420 67413128 PCT