Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0853 atgggtttgtttTCTGGGATTTTTCTGGGGATGGCATTAGGCATAGCATTGATGGCTGCGTGGCAACGCATGATGACATACCGTAGCGCCAAGAGAATTGCAAAGGCAGTTGATGTTAAACTCCTTGGGTCCCTTAACAGAGatgatttaaagaaaatttgtgGTGATAATTTTCCTGAATGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCAGCTGTCCAAACTTTGGCCATTTGTCGCAGATGCAGCAACATTGGTAATAAGAGAATCTGTTGAACCGCTATTGGAAGAGTACAGGCCTCCTGGAATTACTTCATTAAAGTTCAGCAAGCTGTCCCTTGGAAATGTTGCTCCAAAAATTGAAGGTATTCGTGTTCAGAATCTTAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCTGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTCCAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCTGTTGTTGTTGCCCTACTTGCTGAGCCAAAGCCTAGAATTGATTACACTCTGAAGGCTGTTGGTGGAAGTTTGACAGCACTTCCTGGAATTTCAGATATGATTGATGATACTGTGAACTCAATAGTTACTGATATGCTCCAATGGCCTCATAGGATTGTTGTTCCTCTTGGGGGTATACCTGTTGACACTAGTGAACTGGAGCTTAAACCCCAGGGAACGCTTAGAGTGACTGTAATGAAAGCGAATGATCTAAAGAATATGGAAATGATTGGGAAGTCTGATCCTTATGCAGTGTTGCATATTCGACCACTGTTTAAGGTTAAAACAAAGGTTATTGATAACAACTTGAATCCTGTTTGGAATGAGGTATTTGACTTGATTGCAGAAGACAAGGAGACCCAGTCACTCATTCTCGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGCAAAATTACCACTTAATGACCTGGAAGCAGAAACTGAAAAGGAGTTTGAATTGAGGCTGCTGTCGTCACTTGATACACTGAAAGTGAAAGACAAGAAGGATCGAGGAACCTTGACAATAAAGATCTTTTATCACCAATTTGGCAAGGAAGAACAGTTGGTTGCACTAGAAGCAGAGAAAAAGATactagaagaaagaaagaaacttaAAGATGAGGGAGTTATAGGAAGTACAATGGATGCGCTAGATGGAGCAGCATCGACAGTTGGGTCCGGTGTAGGAATGGTTGGTACTGGTGTTGTTGCTGGTGCTGGACTTGTGGGGGGTGGAATTGGTGCTGGAGCTGGACTTGTGGGGAGTGGAATCGGTGCGGGAGCTGGGCTTGTTGGCAGCAGCATTGGTGCTGGAGTTGGTTTTGTTGGCAGTGGTCTTGGTGCTGTTAGTAGTGGACTGAGCAGAGCAGGAAAGTTCATGGGAAGGACAATCACAGGGCAAGGTGTATCCAGAAGGAGTGGTTCATCTACTCCTGTCAATGTGGAGGAGGCTGGTGGTGGTGCAAAACCTCTGTCGTAA 1608 0.426 MGLFSGIFLGMALGIALMAAWQRMMTYRSAKRIAKAVDVKLLGSLNRDDLKKICGDNFPEWISFPVYEQVKWLNKQLSKLWPFVADAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQNLNKGQIIMDIDFRWGGDPNIVLAVEAALVASIPIQLKDLQVFTIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGTLRVTVMKANDLKNMEMIGKSDPYAVLHIRPLFKVKTKVIDNNLNPVWNEVFDLIAEDKETQSLILEVFDKDIGQDKRLGIAKLPLNDLEAETEKEFELRLLSSLDTLKVKDKKDRGTLTIKIFYHQFGKEEQLVALEAEKKILEERKKLKDEGVIGSTMDALDGAASTVGSGVGMVGTGVVAGAGLVGGGIGAGAGLVGSGIGAGAGLVGSSIGAGVGFVGSGLGAVSSGLSRAGKFMGRTITGQGVSRRSGSSTPVNVEEAGGGAKPLS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0853 535 MobiDBLite consensus disorder prediction 508 535 - -
Ssu3g0853 535 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Ssu3g0853 535 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 526 IPR045050 GO:0008289
Ssu3g0853 535 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Ssu3g0853 535 SMART C2_3c 265 362 IPR000008 -
Ssu3g0853 535 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 264 391 IPR035892 -
Ssu3g0853 535 MobiDBLite consensus disorder prediction 509 523 - -
Ssu3g0853 535 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Ssu3g0853 535 Gene3D C2 domain 259 417 IPR035892 -
Ssu3g0853 535 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 526 - -
Ssu3g0853 535 CDD C2 266 360 - -
Ssu3g0853 535 Pfam C2 domain 264 360 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0853 Ssu-Chr3 20792242 20803273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0853 249 353 Lipid Metabolism Gene Families AT3G61300 33.019 9.77e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0853 - - gmx:100785209 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0853 3 20792242 20803273 Ssu4g2648 4 67399420 67413128 PCT