LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g0876	ATGGCTATGCTCAAGAGCGTCTGCTTCAGAGGAACCGCCTTTCCCATTTGCCCCTCCAATGTCACCAATAGTAGAAACACCAGGAGCTCATATTGGAAGCCTGCACAAGCAGCTGTGAAACCCAGTTTCCACCTCCCAATGCGCAGTTTTGAGGTTAAAAATAGGACTTCTGCAGAGGACATAAAGTGTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATATGATGACTTGGTGAATATGCAGATTGGACAAGGTGCTGAAGGTGTTATTGTTGGTGGGACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCTCATACAGTCAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAATACTGGAAGCAACTCCACCAGGGAAGCAATTCATGCCACCGAGCAGGGTTTTGCTGTTGGAATGCATGCTGCCCTTCATATAAACCCTTACTATGGAAAAACCTCCTTGGATGGCATGATTGCTCACTTTCAAAGTGTGCTTCCCATGGGTCCCACAATAATCTACAATGTGCCTTCACGGACTGGTCAAGACATTCCTCCACATGTAATTCAAACCTTAGCTGATAGTGCTAACTTGGCTGGTGTCAAGGAGTGTGTGGGAAATGACCGGATCAAGCTGTATACAGATAATGGAATTGTTGTGTGGAGCGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGGGCTACTGGAGTGATATCTGTTGCAAGCAACCTGGTTCCTGGTTTAATGCGAGAACTCATGTTTGCAGGCGTAAACCCTACATTAAATTCTAAGCTCTTACCTCTGATTGACTGGCTTTTCCACATGCCAAATCCCATTGGTTTGAACACTGCTCTTGCTCAACTTGGGGTTGTCAGGCCCGTTTTTAGGCTACCTTTTGTACCTCTTCCTGTGGAGAAAAGGTTAGAATTTGCCAATTTGGTGAAGGAAATTGGTCGAGAGCATTTTGTTGGAAATAAAGATGTTGAGGTTCTTGATGACGATGACTTCTTCTTGGTTAGTCGTTATTAA	1092	0.4414	MAMLKSVCFRGTAFPICPSNVTNSRNTRSSYWKPAQAAVKPSFHLPMRSFEVKNRTSAEDIKCLRLITAIKTPYLPDGRFDLEAYDDLVNMQIGQGAEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMIAHFQSVLPMGPTIIYNVPSRTGQDIPPHVIQTLADSANLAGVKECVGNDRIKLYTDNGIVVWSGNDDQCHDARWGYGATGVISVASNLVPGLMRELMFAGVNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPVEKRLEFANLVKEIGREHFVGNKDVEVLDDDDFFLVSRY	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g0876	363	ProSitePatterns	Dihydrodipicolinate synthase signature 1.	99	116	IPR020624	GO:0016829
	Ssu3g0876	363	TIGRFAM	dapA: 4-hydroxy-tetrahydrodipicolinate synthase	66	336	IPR005263	GO:0008840\|GO:0009089
	Ssu3g0876	363	Hamap	4-hydroxy-tetrahydrodipicolinate synthase [dapA].	62	337	IPR005263	GO:0008840\|GO:0009089
	Ssu3g0876	363	ProSitePatterns	Dihydrodipicolinate synthase signature 2.	192	222	IPR020625	GO:0016829
	Ssu3g0876	363	PANTHER	DIHYDRODIPICOLINATE SYNTHASE	26	363	IPR002220	GO:0016829
	Ssu3g0876	363	CDD	DHDPS	65	335	IPR005263	GO:0008840\|GO:0009089
	Ssu3g0876	363	PANTHER	4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE, CHLOROPLASTIC	26	363	-	-
	Ssu3g0876	363	SUPERFAMILY	Aldolase	66	338	-	-
	Ssu3g0876	363	PRINTS	Dihydrodipicolinate synthase signature	96	117	IPR002220	GO:0016829
	Ssu3g0876	363	PRINTS	Dihydrodipicolinate synthase signature	132	150	IPR002220	GO:0016829
	Ssu3g0876	363	PRINTS	Dihydrodipicolinate synthase signature	164	180	IPR002220	GO:0016829
	Ssu3g0876	363	PRINTS	Dihydrodipicolinate synthase signature	187	204	IPR002220	GO:0016829
	Ssu3g0876	363	SMART	DHDPS_2	62	339	IPR002220	GO:0016829
	Ssu3g0876	363	Gene3D	Aldolase class I	57	363	IPR013785	-
	Ssu3g0876	363	Pfam	Dihydrodipicolinate synthetase family	64	337	IPR002220	GO:0016829

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g0876	Ssu-Chr3	21155914	21159643	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g0876	K01714		-	gmx:100788930	677.937

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu3g0876	3	21155914	21159643	Ssu3g0876	3	21155914	21159643	ECH
	Ssu3g0876	3	21155914	21159643	Ssu4g2631	4	66905429	66907920	PCT