Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2626 ATGGCTTCTTCGGAAGCCGATTCCCGTCTGAGTCAGGTCGTGGTCCCCGCGCTCGAGAAGATCGTCAGGAACGCGTCGTGGCGAAAGCACGCGAGACTCGCTCACGAGTGCAAATCCGTCATCGAGAGGCTCAGCCAGAAGCACTCGCCGCCCGGTTCGCCCTCCGACGCCGAGCCGGAAACCGCCGTCCCCGGCCCGCTCCACGACGGCGGTCCGGTGGAATTCTCGCTGGCGGAGTCCGAGTCCATCCTCCGGCCTCTCATCAATGCCGCCGGCTCCGGCGTCCTCAAGATCGCCGATCCCGCCGTCGACGCCATCCAGAAGCTCATCGCGCACGGCCTCCTCCGCGGCGAGGCGGACCCGAACCCCGACGGCGCCGCGCCGGAGGCGAAGCTCCTCTCGAGCCTGATCGAATCGGTTTGCAAGTGCCACGATTTCGGCGACGAGGCGATGGAGCTGCTGCTCCTGAAGACGCTCCTCTCCGCGGTGACGTCGATCTCGCTGCGAATCCACGGCGATTCGTTGCTCCTCATTGTGCGAACCTGCTACGACATATATCTCGTGAGCAAGAACGTGGTGAACCAGACGACGGCGAAGGCGTCGTTGATTCAGATGCTGGTGATCGTGTTCCGGCGGATGGAGGCGGATTCGTCGACGGTGCCGATTCAGCCGATTGTGGTGGCGGAATTGATGGAGCCGGTGGAGAGATCCGACGTGGACAATTCGATGACGCAGTTCGTGCAGGGGTTTATAACGAAGATAATGCAGGACATCGACGGCGTTCTGAACCCTACGACGCCGAGCGGGAAGGTTAGTTTGTTAGGTGGACACGACGGTGCGTTTGAGACCACCGCGGTGGAGACCACGAACCCTACGGATTTGTTGGATTCGACGGATAAGGACATGCTGGATGCGAAGTATTGGGAGATTAGCATGTACAAGACGGCGTTGGAGGGACGGAAAGGGGAGCTCGTGGACGGGGAGGTGCTGGAGAGGGACGACGATTTGGAGGTTCAGATTGGGAACAAGTTGAGGAGGGATGCCTTCTTGGTGTTCAGGGCGCTCTGTAAATTGTCCATGAAGACGCCGCCGAAGGAGGCCGCCGGGGATCCGCAGCTCATGAAGGGGAAGATTGTGGCGCTGGAGTTGCTCAAGATTTTGCTGGAGAATGCTGGAGCTGTCTTCAGGACTAGTGAGAGGTTTTTAGGTGCCATCAAGCAGtacttatgtttatctttgttgAAGAACAGTGCTTCAACTCTTTTGATTGTATTTCAGCTGTCATGCTCCATTTTCATCAGTCTGGTGTCAAGATTTAGAGCTGGATTGAAGGCAGAAATTGGAGTTTTTTTCCCTATGATTGTTCTCAGGGTCCTAGAAAATGTTTCTCAACCCAATTTTCAGCAGAAGATGATAGTGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGATTGTGATGTCAATTCATCAAACATATTTGAGAGGATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCTCCTGGTGTAACAACCACACTTTTGCCACCTCAAGAAGCAACATTAAAACTTGAAGCCATGAAAAGCTTGGTTGCTGTTCTAAAATCAATGGGAGACTGGATGAACAAACAATTGCACATTCCTGACCCTCATTCAGCCAAGAAAGTTGAAGCAACTGATAACAGCCCTGAAACTGGAGGTTTTACCATGGTAAATGGGAATGGAGAAGACCCTGTTGATGGATCTGACTCTCATTCGGAAGTCTCCAATGATGCATCTGATGTTTCAACTATTGAGCAACGCCGGGCTTATAAACTAGAACTTCAGGAAGGTATATCTCTTTTTAATAGGAAGCCTAAGAAAGGAATTGAGTTTCTCATCAATGCCAACAAGGTGGGTGATTCACCAGAGGATATAGCTGCTTTTCTTAAAGATGCATCTGGGTTGAACAAGACTTTGATTGGTGATTATCTGGGAGAAAGGGAAGAGTTACCCTTGAAGGTAATGCATGCCTATGTGGATTCCTTTAATTTTGAAGGGATGGAGTTTGATGAGGCAATCAGGGTCTTTCTACAAGGATTTAGACTGCCTGGTGAGGCTCAGAAAATTGATAGGATCATGGAAAAGTTTGCTGAACGTTTTTGCAAATGTAATCCAAAGGCTTTTTCTAGTGCTGACACAGCATATGTCCTTGCCTATTCTGTTATAATGCTCAATACTGATGCTCACAATCCTATGGTGAAGAATAAGATGTCTGCTGATGATTTCATAAGAAACAACCGTGGTATTGATGATGGAAAAGATCTGCCTGAGGAATACTTGAGGTCCTTGTTTGAGAGAATATCTAGAAATGAGatcaaaatgaaagaaaatgatgtgGCTCCTCAACAAAAACAGGCTGTGAACCCTAATAGACTTTTAGGCTTGGATAGTATATTGAATATTGTGATCCGTAAACATCCGGATGAGAATATGGAGACCAGTGATGATCTTATCCGTCATATGCAAGAACAATTCAAAGAAAAAGCTCGCAAAACTGAGTCAATCTATTATGCAGCAACAGATGTTGTAATCCTAAGATTCATGATTGAGGTGTGTTGGGCACCGATGTTAGCTGCCTTCAGTGTTCCTCTTGATCAAAGTGATGATGAGGTTGTGATATCCCTGTGTCTTGAAGGCTTCCGCTATGCTATTCATGTTACTTCTGTGATGTCCATGAAGACTCATAGAGATGCTTTTGTGACTTCGTTAGCAAAGTTTACCTCACTACATTCACCAGCAGATATTAAGCAGAAAAATGTAGATGCAATTAAGGCAATAGTTGTTATTGCTGATGAGGATGGAAATTACTTACAAGAAGCTTGGGAGCATATCTTGACTTGTGTTTCTCGGTTTGAGCATCTACATCTTCTTGGAGAGGGGGCTCCACCAGATGCCACATTCTTTGCCTTTCCTCAGAATGATTCAGAAAAAACAAAGCAAGCAAAGTCAACCATTCTTCCTGTTTTGAAGAAGAAGGGACCTGGGAGGATGCAGTATGCAGCTGCTACATTGATGCGGGGTTCATATGATAGTGCTGGAATTGGCAGTAATGTTTCTGGAGCAGTCACATCAGAACAGGTGAACAATCTagtttctaatttaaatatgttggaACAAGTTGGAAGCTCTGAAATGAATCGCATATTCACTCGGAGTCAGAAGTTGAACAGTGAGGCCATCATAGATTTTGTTAAGGCTCTATGCAAGGTCTCCATGGAGGAATTGAGGTCTCCATCTGATCCACGTGTTTTCAGCCTTACAAAGATTGTTGAGATTGCGCACTATAATATGAACCGCATCAGGCTTGTGTGGTCAAGCATCTGGCATGTTCTCTCTGATTTCTTTGTAACTATTGGCTGTTCTGCAAACCTTTCaattgcaatttttgcaatGGACTCCTTGCGTCAGTTGTCAATGAAATTTCTGGAGCGGGAAGAGCTggctaattataattttcaaaatgaatttatgaAGCCTTTTGTCATTGTTATGCGAAAGAGTAGTGCTGTTGAAATTAGAGAACTAATTATCAGATGTGTCTCTCAAATGGTTCTATCTCGTGTCAACAATGTCAAATCGGGATGGAAGAGCATGTTCATGGTATTCACAACAGCAGCTTATGATGACCACAAAAACATTGTACTCTTGGCTTTTGAAATTATTGAGAAGATTATTCGAGATTACTTTCCTTACATCACTGAGACTGAAACCACAACCTTCACAGACTGTGTGAATTGTCTAATTGCGTTCACCAATAGTAGATTCAATAAAGAGATTAGCCTAAATGCCATTGCTTTTCTTCGGTTCTGTGCAACAAAACTAGCAGCGGGagacctcggctcatcatcaAGGAATAAGGATAAGGAAGTTACTGGAAAGATTTCCTCATCTTCACCTCAAACAGGAAAGGAGGGGAAACAAGATAATGGAGAGGTGACTGGCAAGGATGATCATCTCTATTTCTGGTTTCCTTTATTGGCAGGTTTATCTGAGCTTAGCTTTGACCTAAGACCTGAGATTAGGAAGAGTGCCTTGGAAGTCCTGTTTGAAACCTTACGTAACCATGGCCATCTCTTTTCACTAACTTTATGGGAAAGAGTATTTGAGTCTGTCCTATTTCCAATATTTGATTATGTTCGACATGCTATTGATCCTTCAGGGAGTAGTTCACCGGTCAATGAAGTAGAGGCTGATGGTGAGCTTGATCAAGATGCTTGGCTTTACGAGACATGCACATTGGCCCTCCAATTAGTTGTAGAtctttttgttaacttttacaacaCTGTCAATCCACTTTTAAGAAGGGTTCTGATGCTCCTGGTTAGCTTTATAAAGCGCCCTCATCAAAGCCTCGCTGGCATTGGTATTGCTGCTTTTGTTCGTTTGATGAGTAATGCTGGGGAGCTATTTTCTGATGAAAAGTGGTTAGAAGTAGTTTTCTCACTAAAAGAAGCAGCAAATGCAACACTCCCCAACTTTTTGTTTCTTGAAAATGAGGACTTTACTAGAAATCCTGAACAAGCTTCAACAGCTGAAGATGATAGAGATCTTGCCGAGTCTGGCTCCCCAGATAATTTAGAAAGCCTGAGGATTAGTCGTCTTTATGCTTATTTAACTGATGCAAAATGCCGAGCTGCTGTTCAGCTTTTATTGATTCAGGCGGTGATGGAGATCTATAACATGTATCGTTCTCACCTTTCAGCAAAAGCCATGCTAGTCCTGTTTGATGCTTTGCACGATGTAGCGTTGCATGCACACCATATTAACGACAATACTATATTACGTTCAAAGCTTCAAGAGTTTGGTTCTATGACCCAAATGCAAGACCCTCCACTGTTACGCCTTGAGAATGAATCGTACCAGATCTGCCTTACATTTTTACAAAACCTTGTCATTGACAAGCCTCCTAGTTATGAGGCGGATGAGGTTGAATCTCATCTCATTCAGCTTTGTCAGGAGGTTTTGGAGTTATATATTGAAGTTGCAGGTCTTGGACAAAAATCTGAATCCTCTCATGGTAGACAGCCACACTGGTTAATTCCCTTAGGCTCGGGGAAGAGGAGAGAGTTGGCTGCACGTTCACCTCTTCTTGTGGCTACTCTGCAGGCTATTTGTAGTTTGGGAGAtatttcttttgagaagaacctATCTCATTTCTTCCCTCTTATCTCTAGCTTGGTACGTTGTGAACATGGGTCCAAGGACGTCCAGGTTGCTCTCAGTGATATGCTTAGTTTATCAGTTGGTCCTGTTTTGTTACAGTCATGTTGA 5349 0.4405 MASSEADSRLSQVVVPALEKIVRNASWRKHARLAHECKSVIERLSQKHSPPGSPSDAEPETAVPGPLHDGGPVEFSLAESESILRPLINAAGSGVLKIADPAVDAIQKLIAHGLLRGEADPNPDGAAPEAKLLSSLIESVCKCHDFGDEAMELLLLKTLLSAVTSISLRIHGDSLLLIVRTCYDIYLVSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMEPVERSDVDNSMTQFVQGFITKIMQDIDGVLNPTTPSGKVSLLGGHDGAFETTAVETTNPTDLLDSTDKDMLDAKYWEISMYKTALEGRKGELVDGEVLERDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEAAGDPQLMKGKIVALELLKILLENAGAVFRTSERFLGAIKQYLCLSLLKNSASTLLIVFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVSQPNFQQKMIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVTTTLLPPQEATLKLEAMKSLVAVLKSMGDWMNKQLHIPDPHSAKKVEATDNSPETGGFTMVNGNGEDPVDGSDSHSEVSNDASDVSTIEQRRAYKLELQEGISLFNRKPKKGIEFLINANKVGDSPEDIAAFLKDASGLNKTLIGDYLGEREELPLKVMHAYVDSFNFEGMEFDEAIRVFLQGFRLPGEAQKIDRIMEKFAERFCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKENDVAPQQKQAVNPNRLLGLDSILNIVIRKHPDENMETSDDLIRHMQEQFKEKARKTESIYYAATDVVILRFMIEVCWAPMLAAFSVPLDQSDDEVVISLCLEGFRYAIHVTSVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNVDAIKAIVVIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQNDSEKTKQAKSTILPVLKKKGPGRMQYAAATLMRGSYDSAGIGSNVSGAVTSEQVNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSANLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSSAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKEISLNAIAFLRFCATKLAAGDLGSSSRNKDKEVTGKISSSSPQTGKEGKQDNGEVTGKDDHLYFWFPLLAGLSELSFDLRPEIRKSALEVLFETLRNHGHLFSLTLWERVFESVLFPIFDYVRHAIDPSGSSSPVNEVEADGELDQDAWLYETCTLALQLVVDLFVNFYNTVNPLLRRVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGELFSDEKWLEVVFSLKEAANATLPNFLFLENEDFTRNPEQASTAEDDRDLAESGSPDNLESLRISRLYAYLTDAKCRAAVQLLLIQAVMEIYNMYRSHLSAKAMLVLFDALHDVALHAHHINDNTILRSKLQEFGSMTQMQDPPLLRLENESYQICLTFLQNLVIDKPPSYEADEVESHLIQLCQEVLELYIEVAGLGQKSESSHGRQPHWLIPLGSGKRRELAARSPLLVATLQAICSLGDISFEKNLSHFFPLISSLVRCEHGSKDVQVALSDMLSLSVGPVLLQSC 1782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2626 1782 ProSiteProfiles SEC7 domain profile. 609 796 IPR000904 GO:0005085|GO:0032012
Ssu4g2626 1782 SUPERFAMILY ARM repeat 404 1512 IPR016024 -
Ssu4g2626 1782 MobiDBLite consensus disorder prediction 1318 1333 - -
Ssu4g2626 1782 MobiDBLite consensus disorder prediction 563 608 - -
Ssu4g2626 1782 SMART sec7_5 613 798 IPR000904 GO:0005085|GO:0032012
Ssu4g2626 1782 Pfam BIG2 C-terminal domain 1573 1771 IPR046455 -
Ssu4g2626 1782 Gene3D - 609 690 - -
Ssu4g2626 1782 Pfam Domain of unknown function (DUF1981) 1166 1248 IPR015403 -
Ssu4g2626 1782 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 345 503 IPR032691 -
Ssu4g2626 1782 Pfam C-terminal region of Mon2 protein 1347 1425 IPR032817 -
Ssu4g2626 1782 Pfam Dimerisation and cyclophilin-binding domain of Mon2 6 216 IPR032629 -
Ssu4g2626 1782 Gene3D - 691 811 IPR023394 -
Ssu4g2626 1782 MobiDBLite consensus disorder prediction 1305 1336 - -
Ssu4g2626 1782 Pfam Sec7 domain 617 798 IPR000904 GO:0005085|GO:0032012
Ssu4g2626 1782 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 9 1775 - -
Ssu4g2626 1782 SUPERFAMILY Sec7 domain 613 804 IPR035999 GO:0005085|GO:0032012
Ssu4g2626 1782 PANTHER SEC7 DOMAIN-CONTAINING PROTEIN-RELATED 9 1775 - -
Ssu4g2626 1782 MobiDBLite consensus disorder prediction 42 71 - -
Ssu4g2626 1782 CDD Sec7 616 798 IPR000904 GO:0005085|GO:0032012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2626 Ssu-Chr4 66770404 66780945 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2626 K18442 - gmx:100778814 3301.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0881 3 21210831 21218224 Ssu4g2626 4 66770404 66780945 PCT