Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0881 ATGGCTTCTTCGGAAGCCGATTCCCGCCTGAAACAGGTGCTCGTTCCCGCGCTCGAGAAAATCATCAAGAACGCGTCGTGGCGAAAGCACGCGAGGCTCGCGCACGAGTGCAAGTCCGCGATCGAAACCCTAACCTCGCCGCCGAATCCGCAATCGCCGGCCTCCGACGCCGCCGCCGAGCCGGAGGCCTCGGTCCCGGGCCCGCTCCACGACGGTGGCCCCGCGGAGTACTCCCTCGCCGACTCGGAGTCGATCCTCCGCCCGCTCATCGCCGCGGCCGCCACCGGCGTTGCGAAGATCGCCGATCCCGCCGTCGACGCCGTGCAGCGACTCATCGTGCACGGCTTCCTCCGCGGCGAGGCGGACTCCGGCGGCGGCGCGCCCGAGGCGAAGCTCCTCGCGAGCCTGATCGAGGCGGTGTGCAAGTGCCACGAGCTCGGCGACGACGCCGTCGAGCTGCTCGTGCTGAAGACGCTCCTCTCGGCGGTAACCTCGATTTCGCTGCGAATCCACGGTGATTGCTTGCTCCTGATTGTGAGAACTTGTTACGATATATACCTAGGCAGCAAGAACGTGGTGAATCAGACGACGGCGAAAGCGTCGCTGATTCAGATGTTAGTGATTGTGTTTAGGAGGATGGAGGCGGATTCGTCCACGGTTCCGGTTCAGCCTATTGTTGTGGCTGAACTGATGGATCCCGTGGAGAAATCTGACGTGGACGGTTCCATGACGCAGTCCGTGCAGGGTTTTATCACCAGGATCGTGCAGGACATTGACGGAGTTTTGAATCCGGCGACGCCGTCGTCGGCGGTGGGCGCGCACGACGGCGCGTTCGAGACGACCGCGGCGACGGTGGAGGCCGCGAATCCGGCGGATTTGTTGGACTCCACCGACAAGGACATGCTGGATGCCAAGTATTGGGAGATCAGCATGTACAAGACGGCGTTGGAAGGGAGAAAGGGGGAGCTGGTGGATGGGGAGGTGGTGGAGAGGGACGATGATTTGGAGATTCAGATTGGGAATAAGCTCAGGAGAGATGCATTCTTGGTGTTCAGGGCGCTTTGTAAGTTGTCCATGAAGACGCCGCCAAAGGAGGCGTCGGCCGACCCGCAGTTGATGAAGGGGAAGATTGTGGCGCTGGAGTTGTTGAAGATCTTGCTGGAGAATGCTGGAGCTGTCTTCAGGACTAGTGATAGCAGGTTTTTGGGTGCCATCAAGCAGTACTTATGTTTATCGTTGTTGAAGAACAGTGCCTCAACACTTCTGATCGTTTTTCAGTTATCTTGCTCCATCTTCATTAGTCTGGTATCAAGATTTAGAGCTGGATTGAAAGCAGAGATTGGAGTATTTTTCCCCATGATTGTTCTCAGGGTTCTAGAAAATGTTGCTCAACCTAATTTTCAGCAAAAGATGATAGTGCTTCGTTTTCTAGAGAAGCTTTGTGATGATTCACAGATATTGGTAGATGTTTTTATCAATTATGACTGTGATGTCAATTCATCAAACATATTTGAGAGGATGGTCAATGGACTTCTTAAAACTGCCCAAGGTGTCCCTCCTGGTGCAACGACCACAGTTTTGCCTCCTCAAGAGGAAACACTAAAACTTGAAGCCATGAAGTGCTTGGTTGCTGTTTTAAAATCAATGGGAGACTGGATGAACAAACAATTGCGCATTCCTGATCCTCATTCGGGCAAGAAAGTTGAAGCAGTTGACAATGGCCATGAAGCTGGAGGTCTTTCCTTGGCAAATGGGAATGGAGAAGAGCCAGTTGAAGGATCAGACACTCATTCTGAAATCTCCAATGAAGCATCTGAGGTTTCAACTATTGAGCAACGCCGGGCTTATAAACTGCAACTTCAAGCATATCACTTTTTAACAGGAAGCCAAAGAAAGGGATTGAATTCCTCATCAATGCCAACAAAGTGGGTAATTCACCAGAGGAAATAG 1950 0.5328 MASSEADSRLKQVLVPALEKIIKNASWRKHARLAHECKSAIETLTSPPNPQSPASDAAAEPEASVPGPLHDGGPAEYSLADSESILRPLIAAAATGVAKIADPAVDAVQRLIVHGFLRGEADSGGGAPEAKLLASLIEAVCKCHELGDDAVELLVLKTLLSAVTSISLRIHGDCLLLIVRTCYDIYLGSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPVQPIVVAELMDPVEKSDVDGSMTQSVQGFITRIVQDIDGVLNPATPSSAVGAHDGAFETTAATVEAANPADLLDSTDKDMLDAKYWEISMYKTALEGRKGELVDGEVVERDDDLEIQIGNKLRRDAFLVFRALCKLSMKTPPKEASADPQLMKGKIVALELLKILLENAGAVFRTSDSRFLGAIKQYLCLSLLKNSASTLLIVFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLEKLCDDSQILVDVFINYDCDVNSSNIFERMVNGLLKTAQGVPPGATTTVLPPQEETLKLEAMKCLVAVLKSMGDWMNKQLRIPDPHSGKKVEAVDNGHEAGGLSLANGNGEEPVEGSDTHSEISNEASEVSTIEQRRAYKLQLQAYHFLTGSQRKGLNSSSMPTKWVIHQRK 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0881 649 PANTHER SEC7 DOMAIN-CONTAINING PROTEIN-RELATED 8 623 - -
Ssu3g0881 649 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 344 503 IPR032691 -
Ssu3g0881 649 Pfam Dimerisation and cyclophilin-binding domain of Mon2 6 216 IPR032629 -
Ssu3g0881 649 MobiDBLite consensus disorder prediction 576 606 - -
Ssu3g0881 649 MobiDBLite consensus disorder prediction 43 73 - -
Ssu3g0881 649 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 8 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0881 Ssu-Chr3 21210831 21218224 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0881 K18442 - gmx:100789988 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0881 3 21210831 21218224 Ssu3g0881 3 21210831 21218224 ECH
Ssu3g0881 3 21210831 21218224 Ssu4g2626 4 66770404 66780945 PCT