Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0972 ATGTGCACTGGTGCTGAATCTCGAGGAATTGAAGATGGTAACCCCGTGACTAATTCAAAGGTTGTTGGAGGAGAGTACCGTGATAAAGGAATGAGAAGCAGAGAAGGTGGTGAAGGAACAAGAAACAGTGACTGTGGCAGATTCGTTCAAGGCCTTCATCAACACTTACATCACCTCCTCAAAGCCCTTCTCCCTACCCTTTCTCTCTCTGAGGTGAAAGAAGAGTTGAAATCATTGGCGAAGATTTCATGTCCAATAATGATGACCAACGTGCTTTTGTACTCTCGATCTGTCATTTCCATGCTTTTCTTGGGTCGCCAAGGGAAAGTAGAGCTAGCTGGAGGAGCCCTTGCAATTGGGTTTGCCAACATCACTGCCAATTCATTCCTCAAGGGTCTCACTATGGGAATGGATCCAATTTGTTGCCAAGCATATGGAGCAAAGAGATGGTCAGTTCTAAGCCAAACCTTTTGCAAAACCTTGTGTCTTCTCCTCCTTGTTGCCATTCCCATTTCACTATTATGGCTAAACATGGCACCCCTCCTTCAATGGCTAGGCCAAGACCCTGAAGTCACCAAGGTTGCCCAAGTTTACATGGTCTTCTCTATCCCAGAATTGCTTGCCCAAGTTCATCTCAATCCATTGAGGTCCTTCTTAAGAACACAAGGCTTAACTGCCCCCCTGACTGTGGCTGCCTCTTTTGCTGCCATTTTACACCTCCCCATCAATTATTTCTTTGCCTCATATTTGAAGTTAGGGGTAAAAGGCATTGCATTAGCCACTGGTTTGAATTCCATAAACATGATCCTAGGCTTGGTGCTTTATCTTCTAATGTCAAAGAAATCTCTAAAACCTTGGGAAGGGGCCACAATTCTATCTACCTTCCATGATTGGAGACCATTACTAAGTCTAGCATTGCCTAGTTGCATTTCAGTGTGCTTGGAGTGGTGGTGTTATGAGATAATGCTTTTCCTATGTGGCATTTTAAGTAATCCACAAACCACAGTAGCTACCATGGGTGTCCTAATTCAAACAACTGGGTTCCTATATGTGTTCCCATTTTCATTGAGTGCTGCCTTGACAACCCAAATTGGTCACTCATTAGGTGCAGGGCAACCTTCACGTGCCCAAAGTATAGCCACGGTTGGCCTTTTCATAGCATTTGCCTTAGGGGTCTCGGCCTTCATTTTCTTGATGTTTGTGAGGAAAGCGTGGGGGAAACTTTTCACAAGTGAGGCACAAATTGTTGATATGGTCACAACCATACTTCCAATTTTGGGGTTGTGTGAGATTGGAAATTGGCCTCAAACTGCTGCATGTGGGATTTTATCTGGGACAGCACGCCCTTTTGTGGGTGCAAGAATAAACTTGTGTGCATTTTACTTAATTGGATTACCAGTTGCAATTTTTGCTACTTTCATGCACAAATATCAATTGAGGGGTTTGTGGTTTGGAATGTTGGCAGCCCAAATTTCGTGTTTTTGTATGATGGTGTACACGTTGATTCAAACGGATTGGGGGCATCAAAGTAAAAGAGCTGAGGAACTAGCTCAAAAAGTACATGAGGAAAATGTAAATGATGAGGAAAGTGGGCTCCTTAATTCTAATTTATGa 1614 0.4349 MCTGAESRGIEDGNPVTNSKVVGGEYRDKGMRSREGGEGTRNSDCGRFVQGLHQHLHHLLKALLPTLSLSEVKEELKSLAKISCPIMMTNVLLYSRSVISMLFLGRQGKVELAGGALAIGFANITANSFLKGLTMGMDPICCQAYGAKRWSVLSQTFCKTLCLLLLVAIPISLLWLNMAPLLQWLGQDPEVTKVAQVYMVFSIPELLAQVHLNPLRSFLRTQGLTAPLTVAASFAAILHLPINYFFASYLKLGVKGIALATGLNSINMILGLVLYLLMSKKSLKPWEGATILSTFHDWRPLLSLALPSCISVCLEWWCYEIMLFLCGILSNPQTTVATMGVLIQTTGFLYVFPFSLSAALTTQIGHSLGAGQPSRAQSIATVGLFIAFALGVSAFIFLMFVRKAWGKLFTSEAQIVDMVTTILPILGLCEIGNWPQTAACGILSGTARPFVGARINLCAFYLIGLPVAIFATFMHKYQLRGLWFGMLAAQISCFCMMVYTLIQTDWGHQSKRAEELAQKVHEENVNDEESGLLNSNL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0972 537 TIGRFAM matE: MATE efflux family protein 85 483 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu3g0972 537 MobiDBLite consensus disorder prediction 1 42 - -
Ssu3g0972 537 CDD MATE_eukaryotic 75 512 IPR045069 GO:0042910|GO:1990961
Ssu3g0972 537 PANTHER PROTEIN DETOXIFICATION 53 59 523 - -
Ssu3g0972 537 MobiDBLite consensus disorder prediction 25 41 - -
Ssu3g0972 537 Pfam MatE 85 245 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu3g0972 537 Pfam MatE 307 469 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu3g0972 537 PANTHER MULTIDRUG RESISTANCE PROTEIN 59 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0972 Ssu-Chr3 22759265 22765806 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0972 K03327 - gmx:100816717 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0972 3 22759265 22765806 Ssu3g0972 3 22759265 22765806 ECH
Ssu3g0972 3 22759265 22765806 Ssu4g2494 4 62910451 62916736 PCT