Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0997 ATGGCCAGCCCGATCAAGTTGGCATGCGTGGTTGTGATGTGCATGGCTGTGGTGTGTGCACCCATGACAGCCCAAGCGATGACATGCAACGACATGGTAGGGAACCTGGCACCCTGCCTATCTTACCTGATGCAGGGTGGAGCGGTTTCAGCAACGTGCTGCAACGGAGTGAGGACCATTCTGGGATCTGCCGGCACCACCTCTGACAAACAAACCGTGTGCAACTGTCTTAAGACCGCTGCTAATACCTATCCCATCAACGACAATTACGCGCAGGCACTCCCAGGACTCTGCAATGTCAACGTCCCTTACAAGATCAGCCGCTCCACCAACTGCGCAGCTGGGGCTGTTGAAATGGATACCCAAGATCCTGAAGGGAATGTCCAACAAATGATAAAAAGGATCAGTGCAGAAAACTCATTAAGGCACATTAGAATGCTTCCGATTCACAAGGCATGGACACTTTGCAAAGAGTCTCATACACTCGCACAAGGTACAATCCTAAGAAATCGCGCCTGGCTCCATCTTGGTTACAGCAGAGCGGTGGAAATTTAG 555 0.5135 MASPIKLACVVVMCMAVVCAPMTAQAMTCNDMVGNLAPCLSYLMQGGAVSATCCNGVRTILGSAGTTSDKQTVCNCLKTAANTYPINDNYAQALPGLCNVNVPYKISRSTNCAAGAVEMDTQDPEGNVQQMIKRISAENSLRHIRMLPIHKAWTLCKESHTLAQGTILRNRAWLHLGYSRAVEI 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0997 184 Gene3D - 26 114 IPR036312 -
Ssu3g0997 184 Pfam Protease inhibitor/seed storage/LTP family 29 112 IPR016140 -
Ssu3g0997 184 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 114 - -
Ssu3g0997 184 SMART aai_6 29 112 IPR016140 -
Ssu3g0997 184 CDD nsLTP1 28 112 - -
Ssu3g0997 184 PRINTS Plant phospholipid transfer protein signature 103 114 IPR000528 GO:0006869|GO:0008289
Ssu3g0997 184 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Ssu3g0997 184 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Ssu3g0997 184 PRINTS Plant phospholipid transfer protein signature 69 84 IPR000528 GO:0006869|GO:0008289
Ssu3g0997 184 PRINTS Plant phospholipid transfer protein signature 85 102 IPR000528 GO:0006869|GO:0008289
Ssu3g0997 184 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 28 113 IPR036312 -
Ssu3g0997 184 PANTHER - 1 114 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0997 Ssu-Chr3 23424049 23427731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0997 1 112 Acyl Lipid Metabolism Gene Families AT2G38530 48.696 1.26e-26 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0997 - - pvu:PHAVU_008G087100g 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0997 3 23424049 23427731 Ssu4g2477 4 62190092 62191878 PCT