Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2465 ATGCAAAACCAACAACCCTCCGGTATCATCAACCCTAAGTATTGTGCTCCACATAATGTCGACCTAGCAATTGTGAGAGAGGTCATGACATTAGCTGATAGCTTTACCGTCACCGATGTCAATGGCAAAACCGTTTTCAACCTTAAGGCCTCTCTCATGACCCTCCATGATCACCGTGTCTTGCTAGACGCCGCCGGAGAACCCATCGTCACGCTACGCCGGAAGGTAATGACAGCTCATGATCGGTGGCAAGTTTTCCGTGGTGAAAGCACGGAGCTGAAAGATTTGATCTTTAGTGTAAAGAGATCATCCATTTTCCAGCTAAAGACAAAGTTAGATGTGTTCTTAGCTAGTAATACTAAAGAAGAAGTTTGTGACTTTAAGGTGAAAGGAAGTTGGTTCGAGCGATCTTGTGTTGTTTATGCTGGTGAATCTCTCACCATTGTTGCCCAGATGCATAAGAAGCACACTGTTCAAAGCATTGCGTTTGGGAAAGATAATTTCATGGTTACAGTGTATCCACACATTGACTATGCATTCATAGTGGCATTGATTCTGATTCTTGACGAAATTAACCAAGACAAGAGACAAGCTCAGAATTGA 603 0.4312 MQNQQPSGIINPKYCAPHNVDLAIVREVMTLADSFTVTDVNGKTVFNLKASLMTLHDHRVLLDAAGEPIVTLRRKVMTAHDRWQVFRGESTELKDLIFSVKRSSIFQLKTKLDVFLASNTKEEVCDFKVKGSWFERSCVVYAGESLTIVAQMHKKHTVQSIAFGKDNFMVTVYPHIDYAFIVALILILDEINQDKRQAQN 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2465 200 SUPERFAMILY Tubby C-terminal domain-like 9 192 IPR025659 -
Ssu4g2465 200 Gene3D - 7 198 IPR038595 -
Ssu4g2465 200 PANTHER TUBBY C 2 PROTEIN 4 197 - -
Ssu4g2465 200 PANTHER - 4 197 IPR007612 -
Ssu4g2465 200 Pfam LURP-one-related 11 187 IPR007612 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2465 Ssu-Chr4 61872311 61873520 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2465 - - gmx:100527088 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2465 4 61872311 61873520 Ssu4g2465 4 61872311 61873520 ECH
Ssu3g1006 3 23770027 23772176 Ssu4g2465 4 61872311 61873520 PCT