Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1006 ATGGCAAATCGGTTCCCAATTATAGACCCTTGCTACTGTGCTCCTTATTATGTCAATCTACAAATTAACACAGAACGTGGTGCCACTTACGACCAAAACGGTAACCGTATCTTTTACATTAAAGACACTTTATTCACACTTCACGACCGTCGTGTCTTATGTGATTATAGAGGAAACCCCATCGTCACTCTATACAAGAAGaatATGACACTGCACGGGCGACGCCAAGTTTTCAAAGGTAAAAGCAGTGATCGCTCTGAGTTGCTCTTTTCGGTGAAGAGATCGTCAATGATCCAGAGTGGGATGATTAAATTAGAAGTCTTCCTTGCTAACAACAGAAATGAAAGATTTTGTGACTTTAGAGTCATTGTTTGTAGAGATAAAAGCTTTTGCACTATTTATGCTGGTGAATCTCCTACAATTGTTGCTTCGATGAAGAATAATGGCGGCTTCGATGTCTTGGTCTATCCCTACGTGGACCACGCATTCATAGTAGCACTACTTATGATTATTAACAAGATGAAGCATTATTTTGATGAAGTGATGAATTTGCCCGTAGGAATGACAAATGTAACATTGGTTTTGTTCTGGTTTAGAGCAATTTTGCTAGGCTACAACTTGTCAACTTAG 630 0.3921 MANRFPIIDPCYCAPYYVNLQINTERGATYDQNGNRIFYIKDTLFTLHDRRVLCDYRGNPIVTLYKKNMTLHGRRQVFKGKSSDRSELLFSVKRSSMIQSGMIKLEVFLANNRNERFCDFRVIVCRDKSFCTIYAGESPTIVASMKNNGGFDVLVYPYVDHAFIVALLMIINKMKHYFDEVMNLPVGMTNVTLVLFWFRAILLGYNLST 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1006 209 PANTHER - 3 176 IPR007612 -
Ssu3g1006 209 Pfam LURP-one-related 10 170 IPR007612 -
Ssu3g1006 209 SUPERFAMILY Tubby C-terminal domain-like 6 175 IPR025659 -
Ssu3g1006 209 Gene3D - 6 177 IPR038595 -
Ssu3g1006 209 PANTHER PROTEIN LURP-ONE-RELATED 13 3 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1006 Ssu-Chr3 23770027 23772176 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1006 - - gmx:100778236 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1006 3 23770027 23772176 Ssu4g2465 4 61872311 61873520 PCT