Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2463 ATGACTCGAGATACTAGTGGAGGAAGCTTGCAAGAGGGTCTGCAAGATACAGCATTAGTTGGAAACACCAATGGTTTCAAGGCTAATGCAAATAGTTCTCTACAAATTTCATCATCCCAAAGGGGACTGCTAAGCGATGAAAGCCATCATATAGGGAAACACAGAATGTTGACATCTATTGCCAGTATATTTAAACTACATAGATTCATACTCCATGCTAATTTAGCTTATCCATCTACTAAGATTAGGCAAAAGACTGAGGAAAGATATGAATTCTCACATTTTGTGCCTGCAATCAGGGAAATTTTTAGAAAgccttttaattgttttttggcCAAGAAGATTGATTGGTCATCTCTCAGGAGAAGCTGCAAGCAATGGATTAAGAATCCTTTGAACATGGCCATTCTTTTATGGATAATTTGTGTTGCTGTTTCAGGAGcaattctttttcttgtcaTGACAGGAATGTTAAACAAAATCCTTACTAAGCAGTCACAAAGGAACTCATGGTTTGAGGTCAACAATCAATTTCTCAATGCTCTATTTACTCTCATGTGTCTGTACCAACATCCAAAGAGGTTCCatcatcttgtacttctttgTAGGTGGAAGCCAAATGACATCATAATCCTAAGAAAAATATACTGTAAGAATGGCACTCGCAAGCCTCATGAATGGGTCCATATGATGGTAGTAGTTGTGTTACTCCATGTTAATTGCTTTGCTCAGTATGCCCTTTGTGGCCTTAACTGGGGTTTCAATAGATCTGAAAGACCTGTTGTTGGGGTTGGTATTTGCATCTCCATTGCAATTACTGCTCCAGCACTTGCAGGAGTTTACTGCATTACCAGCCCTCTAGGCAAGGAGTATGAAACCGATGAAGAAGCACAGAATCATATTCCCACTATTACTGCATTTGCATCAAGAAATGATCATAGTCTTGTTGAGTACACACCTCAATGGAGAGGGGGACTATTTGATCTTTGGGACAATCTTTCTGTGGCAtgtctttctctcttttgtgGTTTTTGTGTCTTTGGAAGGAATATGGAAAGACTTCATTTTGGAAACATGTATGTCCACATTGCAACTTTCCTCCTCTTCTGTGTGGCTCCCTTTTGGATCTTCAATATGGCTACCTTGAATATTGATGATGAGTGTGTAAGAAGAGTTCTGTGGTTGATAGGTATATTGCTATGTGTGTTTGGTTTACTCTATGGTGGCTATTGGAGGATTCAAATGAGGGAAAGATTTAACTTGCCaccaaataaaatttgttgtggGAAGCCAGCAGTGACGGATTGCATACAGTGGCTATTGTGTTGCTGGTGTTCCCTTGCACAGGAAGTAAGAACTGCAGAATCTTATGACATAGTTGATGACAAATTTTTCTGCAAAAAAAAGACTGAGAGTTGTGTTCAGCCAGCACTGAAGTCATTGCCTCCTGAAGATAAAGTTCCTCAAGTTACATCAATGTCCACTTCTTCATTTTGGAACAATCATGGTTTGTCCAAGATCTGGTCTGAAGAGTCAAAAGATTATTCAAGCCTCTCAGAAATTGAGTTTTCAAGAGAAAGAAAGCAAAATGTTATGGAAGCGCCTATTCCTCTAACAATTCAAATTGATGAGAAAGACAGCAAAAGAACATAA 1653 0.3702 MTRDTSGGSLQEGLQDTALVGNTNGFKANANSSLQISSSQRGLLSDESHHIGKHRMLTSIASIFKLHRFILHANLAYPSTKIRQKTEERYEFSHFVPAIREIFRKPFNCFLAKKIDWSSLRRSCKQWIKNPLNMAILLWIICVAVSGAILFLVMTGMLNKILTKQSQRNSWFEVNNQFLNALFTLMCLYQHPKRFHHLVLLCRWKPNDIIILRKIYCKNGTRKPHEWVHMMVVVVLLHVNCFAQYALCGLNWGFNRSERPVVGVGICISIAITAPALAGVYCITSPLGKEYETDEEAQNHIPTITAFASRNDHSLVEYTPQWRGGLFDLWDNLSVACLSLFCGFCVFGRNMERLHFGNMYVHIATFLLFCVAPFWIFNMATLNIDDECVRRVLWLIGILLCVFGLLYGGYWRIQMRERFNLPPNKICCGKPAVTDCIQWLLCCWCSLAQEVRTAESYDIVDDKFFCKKKTESCVQPALKSLPPEDKVPQVTSMSTSSFWNNHGLSKIWSEESKDYSSLSEIEFSRERKQNVMEAPIPLTIQIDEKDSKRT 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2463 550 Pfam Protein of unknown function (DUF2985) 126 204 IPR021369 -
Ssu4g2463 550 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 321 455 IPR006461 -
Ssu4g2463 550 PANTHER - 1 545 - -
Ssu4g2463 550 Pfam PLAC8 family 322 452 IPR006461 -
Ssu4g2463 550 PANTHER PLAC8 FAMILY PROTEIN-RELATED 1 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2463 Ssu-Chr4 61785741 61787393 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2463 - - gmx:100799892 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3095 6 70490248 70491924 Ssu4g2463 4 61785741 61787393 ECH
Ssu4g2463 4 61785741 61787393 Ssu4g2463 4 61785741 61787393 ECH