Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2460 atggTTGCAGCTGAAGTAATGCCTGAGAAACCCCTTCAAGCAGTTCCCATCCTTACAAGAGAGAGCAGTTTTTCatcttcacctagaagGTTGGAAGGCAAAGTTGCTATTGTAACCGGTGGCGCGAGAGGGATTGGGGAGGCAACGGTGCGAGTTTTTGTGCAGAACGGTGCAAAGGTCGTGATTGCCGATGTTGAGGATGCACTTGGGACGATGCTTTCCGAGACCTTAGCTCCTTCGGCCACCTACGTGCACTGCGATGTTAGCATAGAAGAAGAGGTTGAGAAGTTGGTGAGTTGCACAGTTTTTCGCTATGGCCAACTCGACATAATGTTCAACAATGCCGGGGTGCTCGGGAACCAGTCCAAGAGCAAGAGCATAGTCGACTTTGACCCCGAAGAGTTTGACCGGGTGATGCGCGTGAACGTGAAGGGAACGGCGTTGGGGATCAAGCACGCGGCGAGGGCGATGATTCCAAGGGGAATCGGGTGCATAATTTCCACGGCCAGCGTCGCTGGGGTCATGGGGGGGCTTGGGCCACACGCCTACACGGCTTCAAAGCATGCCATTGTGGGGCTCACCAAGAACACCGCTTGCGAGTTGGGGAGGTATGGGATAAGGGTCAATTGCATTTCCCCATTTGGGGTGGCGACCAACATGCTCGTGAGTGCTTGGAGGAGTGGCGGCGGTGATGAGGAGGACGATGAGGGTGGCGAGAGTGTCGATTTCGGGTTGCCTTTCCCCGAGGAAGTGGAGAAAATGGAGGGGTTTGTGAGAGGGCTTGCCAACTTGCAAGGAGCAACTCTGAGGGCCAGAGACATTGCTGAGGCTGCACTCTACCTTGCTAGCGATGAATCAAAGTATGTTAGTGGCCATAATCTTGTTGTGGATGGGGGAGTCACCTCCTCAAGAAATTGCATTggtttgtaa 930 0.5247 MVAAEVMPEKPLQAVPILTRESSFSSSPRRLEGKVAIVTGGARGIGEATVRVFVQNGAKVVIADVEDALGTMLSETLAPSATYVHCDVSIEEEVEKLVSCTVFRYGQLDIMFNNAGVLGNQSKSKSIVDFDPEEFDRVMRVNVKGTALGIKHAARAMIPRGIGCIISTASVAGVMGGLGPHAYTASKHAIVGLTKNTACELGRYGIRVNCISPFGVATNMLVSAWRSGGGDEEDDEGGESVDFGLPFPEEVEKMEGFVRGLANLQGATLRARDIAEAALYLASDESKYVSGHNLVVDGGVTSSRNCIGL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2460 309 CDD secoisolariciresinol-DH_like_SDR_c 30 301 IPR045309 GO:0016616
Ssu4g2460 309 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2A-LIKE 4 309 - -
Ssu4g2460 309 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 106 117 IPR002347 -
Ssu4g2460 309 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 202 IPR002347 -
Ssu4g2460 309 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Ssu4g2460 309 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 4 309 - -
Ssu4g2460 309 Gene3D - 20 307 - -
Ssu4g2460 309 PRINTS Glucose/ribitol dehydrogenase family signature 106 117 IPR002347 -
Ssu4g2460 309 PRINTS Glucose/ribitol dehydrogenase family signature 264 284 IPR002347 -
Ssu4g2460 309 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Ssu4g2460 309 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Ssu4g2460 309 PRINTS Glucose/ribitol dehydrogenase family signature 204 221 IPR002347 -
Ssu4g2460 309 PRINTS Glucose/ribitol dehydrogenase family signature 183 202 IPR002347 -
Ssu4g2460 309 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 301 IPR036291 -
Ssu4g2460 309 Pfam Enoyl-(Acyl carrier protein) reductase 255 301 - -
Ssu4g2460 309 Pfam short chain dehydrogenase 34 223 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2460 Ssu-Chr4 61724536 61725968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2460 31 301 Acyl Lipid Metabolism Gene Families AT1G63380 32.168 5.62e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2460 - - gmx:100790562 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2460 4 61724536 61725968 Ssu4g2460 4 61724536 61725968 ECH
Ssu4g2460 4 61724536 61725968 Ssu3g1020 3 24035695 24036981 PCT