Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1020 ATGACTGTAATGCCTGAGATACCCCTTCAGGGAGTTCCTCCACTGGTCACAGACACCACTTTTTCTCCTTCATCATCTAAAAGgttGGAAGGAAAAATTGCTATTGTAACTGGGGGTGCCAGGGGCATAGGCGAAGCAACTGTGAGAGTTTTTGTGAGGCACGGTGCGAAGGTGGTGATTGCCGATGTTGAGGATGCAGCTGGAGCCATGCTTGCGGAGACACTGTCTCCTTCGGCAACCTATGTTCACTGCGATGTTAGCTTGGAGAAAGAGGTTGAGAACTTGGTCAGTTCCACAATTTCTCGCTATGGACACCTTGACATCATGTTCAACAATGCTGGGGTGCTGGGGAACCAGTCCAAGAACAAGAGCATTCTCAACTTTGACCCCGACGAGTTTGACCGAGTGATGCGCGTGAATGTGAAGGGAGCGGCTTTGGGGATCAAGCACGCGGCAAGGGCGATGATTCCCAGAGGAGCTGGGTGCATTATCTCAACTTCTAGTGTTGCCGGGGTCATGGGGGGGCTCGGACCGCATGCCTACACAGCTTCAAAGCACGCCATAGTTGGGCTCACGAAGAACACTTCTTGTGAGCTGGGGAGGTATGGGATCAGGGTGAATTGCATTTCCCCGTTCGGGGTGGCCACTTCCATGCTTGTGAATGCGTGGAGGCCTTGTGATGAAGAGGCGGATGGGGGCATCAATTTTGGGGTGCCCTTCCCAGAGGAGGTGGAGAAGATTGAGGAGTTTGTTAGAGGGCTTGGCAACTTGAGAGGGTCAACCCTGAGGCCTATGGACGTTGCTGAGGCTGCACTCTATCTTGCTAGTGATGAATCAAAGTATGTTAGTGGTCATAATCTTGTTGTGGATGGCGGAGTCACTTCCTCAAGAAATTGTATTGGGCTGTAA 909 0.516 MTVMPEIPLQGVPPLVTDTTFSPSSSKRLEGKIAIVTGGARGIGEATVRVFVRHGAKVVIADVEDAAGAMLAETLSPSATYVHCDVSLEKEVENLVSSTISRYGHLDIMFNNAGVLGNQSKNKSILNFDPDEFDRVMRVNVKGAALGIKHAARAMIPRGAGCIISTSSVAGVMGGLGPHAYTASKHAIVGLTKNTSCELGRYGIRVNCISPFGVATSMLVNAWRPCDEEADGGINFGVPFPEEVEKIEEFVRGLGNLRGSTLRPMDVAEAALYLASDESKYVSGHNLVVDGGVTSSRNCIGL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1020 302 PRINTS Glucose/ribitol dehydrogenase family signature 33 50 IPR002347 -
Ssu3g1020 302 PRINTS Glucose/ribitol dehydrogenase family signature 155 171 IPR002347 -
Ssu3g1020 302 PRINTS Glucose/ribitol dehydrogenase family signature 181 200 IPR002347 -
Ssu3g1020 302 PRINTS Glucose/ribitol dehydrogenase family signature 202 219 IPR002347 -
Ssu3g1020 302 PRINTS Glucose/ribitol dehydrogenase family signature 104 115 IPR002347 -
Ssu3g1020 302 PRINTS Glucose/ribitol dehydrogenase family signature 257 277 IPR002347 -
Ssu3g1020 302 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 294 IPR036291 -
Ssu3g1020 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 200 IPR002347 -
Ssu3g1020 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 169 IPR002347 -
Ssu3g1020 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 104 115 IPR002347 -
Ssu3g1020 302 Pfam Enoyl-(Acyl carrier protein) reductase 256 294 - -
Ssu3g1020 302 Pfam short chain dehydrogenase 32 221 IPR002347 -
Ssu3g1020 302 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2A-LIKE 2 302 - -
Ssu3g1020 302 CDD secoisolariciresinol-DH_like_SDR_c 28 294 IPR045309 GO:0016616
Ssu3g1020 302 Gene3D - 20 300 - -
Ssu3g1020 302 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 2 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1020 Ssu-Chr3 24035695 24036981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1020 29 294 Acyl Lipid Metabolism Gene Families AT1G63380 31.047 7.25e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1020 - - gmx:100775210 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1020 3 24035695 24036981 Ssu3g1020 3 24035695 24036981 ECH
Ssu4g2460 4 61724536 61725968 Ssu3g1020 3 24035695 24036981 PCT