Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2458 ATGCCGCTCTCGAAGTACCGCGTGAGGAGCGAGTACAGCTTGGCGGATCCCGAGCTGTACCGCGCCGCCGACAAGGACGATCCCGAAGCGCTCCTCGAAGCCGTCGCCATGGCCGGCCTCGTCGGACTCTTGCGCCAGCTCGGCGACCTCGCCGAGTTTGCTGCCGAGATCTTCCATGATTTACATGAAGAAGTAATGGCTACTGCTTCAAGAGGCCATGGTCTTATGGCTCGTGTTAAACAGCTTGAGGCTGAAGTTCCTTCACTTGAGAAGGCTTTCTTTTCTCAAACTCATCATTCATCATTCTATACTAATGGAGGGATTGATTGGCATACTAATCTACGGTCTGAACAAAATCTTGTGACTCGTGGAGACTTACCTCGATTTATAATGAATTCATATGAAGAATGTCGTGGTCCCCCTAGACTGTTCCTTCTGGATAAGTTTGATGTAGCTGGGGCTGGGGCATGTCTGAAGCGTTATACTGATCCATCATTCTTTAAAATGGAATCAACTTCATCTGATACTGCTACAGTAGAAGTTCAGAGGGAAAAGAGAATTCGTAAAGTCAAGCTGAAGAAAGGTGCACGGCGGAAGGATGGTGAGGCCCCTAATGTTGTACCATCACATGCAAAATTACATCAGCTGCTTCTTGAGGAGCGTATTGAGAATGGTTATAGTAATCCTGCGCGTCTTGTGAAGTTGAAGAAAAGACAATTAAATGGACCTGCAGTTGAAGTAAGAGCTGGGAAGAGTTACATGGAGAAATTTCTGGAAACTCCCTCACTTGATCATAAAATGATTTGTGAAACTTCAATCTTTCCACTGCCTGGGAGATTGACATCAGATGATACTGGTGAGGCTGGGATTAAAATTCTTGAAATCAGTAGCATTAGTCCTGTGAAAAAGTCATTGGGAAATAAAAACACCTATTCATCCCCTAATGAGCAGGAATTAGAACTAAAACCATTTTCAGAAATGGATGGTGGGACAAATGGAGATCTTGTGAAGGTGAAAGAACAAATCCCAGCTGGTGGGTCAGATAATATGTCTTCTAATCATCTTAAGTTGCCTGATGAAGCAGAATTGGCTGTTgatgaacaaaagaaaatagaaggcAGCTTAGATGGGTACCATTCTGATGATGCGGCTAGTGAAGTTGACAATTACATGGATGCTTTAACTACCATGGAATCAGAATTGGAAGCAGACAACGAGTATAAACCTATGAATAGCTTCTTGAATACTCTAAAGGCAACAAATACCAATGATAAACAAGAACATCAACTACAAGCTCGATTTTCAGACTCTCAATCATTTGGAGACTCCTCAACGTCTGATGACATTAGTGCTTTCAAACAAGATAGAGATGAAGAACATATTGAAGTGCAAGCTCAGTCGTTAGATTCTCAATCAACTGGAACCTCCTCTACATTAGACAATAATAGTTCGTTCAAAAGAGATGGAAATGAGCATGTCGAAGTGCAAGCTCACCTCTCATATTCTCAATCTATTGAAAACTCCTCTACTTCAGATGAAAATGGTTCTTTCAATAAAGATAGATCCTATTTCTCTCACTCTGATTCATTAAGCACGGTGGTTGAAAATACACAATCAGAACCTATATTATTCACAAATAGTAAGTATTATGAACCGGAGGTTGAAGATAAGCCATCCAACCAGCTTCCCCAAATTGTTGAGTTTCAAAACACAGATTGTGGGAGGTATGACATGCATGATGATGCACATGTTCACGAAGAAGAGATTTCTGATTCAGGGCTAGCCTCTTCGGATCTGATGACATCAGGACAGATGTTATGTTCTGATCATGGACCCACCTCACCAGTGACCCTACCTACAGGAACTCAGTTGGATGAAACCCCATCTAACCCTGTTGAACTTAATTTAAGATTAGATGATGACGATGATGCAGACAGAACAGGTCTTGTTGAATCTATTGCTTCCAAACCTGTTTCTCTCTCCCTAATAAAAGATAATGCTTGCCTCGTGGATTCTTCTGATAAAACATCGTTAGACAACTTGGATGAAGATGATCCTTATATTCACTCTGATGATTTGTTACAAGTTTCTAATGATTTGGAATTAGCTCACGTAGATGAATTCAGTGATCATTCTGAAATCAAAATGTTCCAGGCAGAACCTCCCAATGAAAACAGTTCTCAAATTTTGGTTAATAGAGATATTGGTTCACCAGGAGATGATCCCGTTTGCCCATCCATGGAAGAATTAATCTTGAATTCGGGTGCTATGCTGGCTCATGATTGTCGAGACTCAAAGGATGAAGATTGTACTATAGCAACCCAACTTGATTTGGAGACTCCTGTTGTGGAGATACCTCCAGTGAGTTGCTTTCCGAAGGAGCAATCCTCTGATTCAACTCAAAACAATACACAGGATGAACCTGGCTCAGCAGAAATTGAAGTTTCGAATTCTGATCTGCTATCAAAATTTGAAGAGATACCAAAAATGGTGCATGATGATGAAATAAATGCATCCACCTGCAGTGTCGATCCAGTTGAAGGTGATGGTGATTTTAAAGACCCATCTCCTGATAATCATGTGATCGTAAATGATCTGGTCACTGAAAATGTTCAGTCAGAAGATCAAGCTGTACATTCTGTTCCTTCTATTGATAGTGCTGAAAATGATGTGGGTATCGTTACTTGTCCAGCTTCAAGTCAGATTTGTTCTCCGTCAAGGGGTCTTTCAGATTTGGAAGAACCTCTGTTGAGTTCTCATCCTTATCAAATGGAAATGAAATCCAATGAAGTAGAATTGATGCAAATGTCCATGGACACAAGTGCAGAGAACAGGGAGAATCAAATTGCACCATTGCTAGATGTAACATCATCTGATGTCATATATTCTCCAATGAGTAATGTTACACAGTTAGGAGAATCTCTTCCTTCTTTTGAAGATTCACAGAAGAAAGAGATGGAAGTTGATGAGGCAGTTGCTAGAGAATCTTTGACAGAACTAGAGGAACAGAAGATGGTGGATCAACCAGAAATTGCTTCCATGGATGTACAATTGAACCTGAACAAATTGGTTCCCTTTGATGTTCCAAATTCagaaatatgtaataatattcaAAAGTCATCTCCAAGGGAGAAATGTCAACATAGTGCTTTTGTTGATGATGCAGAAATGGTGCCTGAATTTGCGGGGTTACATGCCCAGCAGTCAGAATCAATATTCTATGGCCAGCATGATCCCTTACAAAATGGCAGAGATAGTTTTTCATCACCTTTTGGTAACCAGTTGGAGCCTGAAACTGATTTAGATCTGTTCTCAAAATCCCAAATTGGTGGACAGGATGCAGAATTCCCACTCACAGATGAGAAAAACTTTGCCTCTGAGAAATCTCAATATCAGCAGATGCAGGTATATCAATTGGAGCAAGCAAGCACTCGTGCTACTTCTGAATCTGTATCAGAAATCCATGCAGATGAGCCATCATCATTTTATTCCTTGCCACAGTCATCTAGCCAGGAGAGTAATGCTGCGAAACATGTCACGGATCCATTGAACCCTCTTCTTCCTAACCTCTTTCCCAAGGCAACTGAAAATAATCTTGATGAGATGCCACCTATGCCTCCTCTACCGCCTATGCAATGGAGAATGGGCAAGGTTCAACATACTTCCCTAGCTTCAGAAAGAGAAGAGTTAGAAGTAAGTCAGGCCTCAGTCCAGCCAATGCAGCCAATTAGACCTGATAATAAATCTCTATTTGGTTTGCCAACTTCTGAGAGAGAGACCTTGTTGTATCAGAGTCCATTTTTGCCTGTCATGGCTGTGGAAAGTGATAAGCTCCAACATTCTTCTGGGCATTCTGTTGGTGTTTCAGGGCATCCTGTTGCTATACCTTTTCAATTTCCTATCATGGTTAATGAATCAAAAGGTCAATATAATTACCTATTGCTGGACAGAAACCAAATTCAGAACCCCTTCTTAACATTACCTGTGGCATCTGCGGGCATGCCTCCTCAGGGTTTCATTGTTGCTCCTGAGGGAGAAATGATACAGAATTCAAACCCATGCACACCAATACCAGCTGCTGCATATGCTGTTTCAGGACATGATTCCGTCTCTCAGCAAGAAAAATCAACTCAACCTCCACATCAGTTAATGACGGAGACTAGTTCAGATGATAAATCATTTCAGCAGAGTATGAGTAATATGGTATCTATGGACAGGCCTCCACATGGTAATGTAGTTGCTTCTGAGGGAGAAATGGTACTAAATTTGAACCCATGCCCTACAATTCCACCTGCTGAATGTGCTGTTTCTGGACATGATTCCATCTCACCTCAAGAAAAACTGACTCAACCTCCAAGTCAGTTAGTGGCGGAGCCTAGTTCAGATGATAAAACACTTCTGCAGTCTGTAACTAATGTGGTATCTATGGACAGTCCTCACGGTCATATTGCTGCTGAGGGAGAAATGGTACAAAATTCTAACCCAGACCCTCCAATTCCACCTGTTGAATGTGTTGTTCATGGACCTGGACACGATTCTATCTCTTCTCAAGAAAAATTGACTCAACCTCCAAGTCAATTATTGTCAGAGACTAGTTATGAAGTTAATATACTTCATCAGTCTATAAATAATGTGGAAGTGGAACAAGGACGTTTGCCTATCTCATTCATGCCTCCACCAAACATGGAAAGTACGGAGCCTAATCAGAGTTTCCTGCCCTTTGAGGGGGAAATGGCACCGTCCTTGGATACATCTGCTCAAACATCAGATGTTGAGAGTGAAAGGACAAATGCAAGACCAAAGAATAAGCTTCCCCGTCCTCGTAATCCTCTAATAGATGCTGTTGCTGCTCATGACAAAAGCAAGCTTAGGAGGGTTACTGAACGGGTTATGCCTCAAATTGCACCAAAGGTAGATGAAAGGGATTCTTTACTAGAACAGATAAGAACAAAGTCCTTCAACTTGAAGCCTACTGTGACTACACGATCTAGCATTCGAGgtccaaaaacaaatttgaagcTTGCTGCCATCTTGGAGAAAGCAAATGCAATTCGCCAGgctTTGGCTGGaagtgatgaagatgatgatgcgGATTGGAGCGATTCTTGA 5109 0.4103 MPLSKYRVRSEYSLADPELYRAADKDDPEALLEAVAMAGLVGLLRQLGDLAEFAAEIFHDLHEEVMATASRGHGLMARVKQLEAEVPSLEKAFFSQTHHSSFYTNGGIDWHTNLRSEQNLVTRGDLPRFIMNSYEECRGPPRLFLLDKFDVAGAGACLKRYTDPSFFKMESTSSDTATVEVQREKRIRKVKLKKGARRKDGEAPNVVPSHAKLHQLLLEERIENGYSNPARLVKLKKRQLNGPAVEVRAGKSYMEKFLETPSLDHKMICETSIFPLPGRLTSDDTGEAGIKILEISSISPVKKSLGNKNTYSSPNEQELELKPFSEMDGGTNGDLVKVKEQIPAGGSDNMSSNHLKLPDEAELAVDEQKKIEGSLDGYHSDDAASEVDNYMDALTTMESELEADNEYKPMNSFLNTLKATNTNDKQEHQLQARFSDSQSFGDSSTSDDISAFKQDRDEEHIEVQAQSLDSQSTGTSSTLDNNSSFKRDGNEHVEVQAHLSYSQSIENSSTSDENGSFNKDRSYFSHSDSLSTVVENTQSEPILFTNSKYYEPEVEDKPSNQLPQIVEFQNTDCGRYDMHDDAHVHEEEISDSGLASSDLMTSGQMLCSDHGPTSPVTLPTGTQLDETPSNPVELNLRLDDDDDADRTGLVESIASKPVSLSLIKDNACLVDSSDKTSLDNLDEDDPYIHSDDLLQVSNDLELAHVDEFSDHSEIKMFQAEPPNENSSQILVNRDIGSPGDDPVCPSMEELILNSGAMLAHDCRDSKDEDCTIATQLDLETPVVEIPPVSCFPKEQSSDSTQNNTQDEPGSAEIEVSNSDLLSKFEEIPKMVHDDEINASTCSVDPVEGDGDFKDPSPDNHVIVNDLVTENVQSEDQAVHSVPSIDSAENDVGIVTCPASSQICSPSRGLSDLEEPLLSSHPYQMEMKSNEVELMQMSMDTSAENRENQIAPLLDVTSSDVIYSPMSNVTQLGESLPSFEDSQKKEMEVDEAVARESLTELEEQKMVDQPEIASMDVQLNLNKLVPFDVPNSEICNNIQKSSPREKCQHSAFVDDAEMVPEFAGLHAQQSESIFYGQHDPLQNGRDSFSSPFGNQLEPETDLDLFSKSQIGGQDAEFPLTDEKNFASEKSQYQQMQVYQLEQASTRATSESVSEIHADEPSSFYSLPQSSSQESNAAKHVTDPLNPLLPNLFPKATENNLDEMPPMPPLPPMQWRMGKVQHTSLASEREELEVSQASVQPMQPIRPDNKSLFGLPTSERETLLYQSPFLPVMAVESDKLQHSSGHSVGVSGHPVAIPFQFPIMVNESKGQYNYLLLDRNQIQNPFLTLPVASAGMPPQGFIVAPEGEMIQNSNPCTPIPAAAYAVSGHDSVSQQEKSTQPPHQLMTETSSDDKSFQQSMSNMVSMDRPPHGNVVASEGEMVLNLNPCPTIPPAECAVSGHDSISPQEKLTQPPSQLVAEPSSDDKTLLQSVTNVVSMDSPHGHIAAEGEMVQNSNPDPPIPPVECVVHGPGHDSISSQEKLTQPPSQLLSETSYEVNILHQSINNVEVEQGRLPISFMPPPNMESTEPNQSFLPFEGEMAPSLDTSAQTSDVESERTNARPKNKLPRPRNPLIDAVAAHDKSKLRRVTERVMPQIAPKVDERDSLLEQIRTKSFNLKPTVTTRSSIRGPKTNLKLAAILEKANAIRQALAGSDEDDDADWSDS 1702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2458 1702 ProSiteProfiles WH2 domain profile. 1640 1658 IPR003124 GO:0003779
Ssu4g2458 1702 MobiDBLite consensus disorder prediction 1442 1462 - -
Ssu4g2458 1702 MobiDBLite consensus disorder prediction 457 487 - -
Ssu4g2458 1702 Gene3D - 1 90 - -
Ssu4g2458 1702 MobiDBLite consensus disorder prediction 788 816 - -
Ssu4g2458 1702 PANTHER WH2 DOMAIN, SCAR/WAVE FAMILY PROTEIN-RELATED 552 930 - -
Ssu4g2458 1702 PANTHER WH2 DOMAIN, SCAR/WAVE FAMILY PROTEIN-RELATED 926 1390 - -
Ssu4g2458 1702 PANTHER WH2 DOMAIN, SCAR/WAVE FAMILY PROTEIN-RELATED 1 519 - -
Ssu4g2458 1702 Coils Coil 983 1003 - -
Ssu4g2458 1702 PANTHER WASP-1 926 1390 IPR028288 GO:0005856|GO:0030036
Ssu4g2458 1702 PANTHER WASP-1 1 519 IPR028288 GO:0005856|GO:0030036
Ssu4g2458 1702 MobiDBLite consensus disorder prediction 792 816 - -
Ssu4g2458 1702 PANTHER WH2 DOMAIN, SCAR/WAVE FAMILY PROTEIN-RELATED 1401 1702 - -
Ssu4g2458 1702 MobiDBLite consensus disorder prediction 1580 1609 - -
Ssu4g2458 1702 MobiDBLite consensus disorder prediction 465 484 - -
Ssu4g2458 1702 MobiDBLite consensus disorder prediction 1366 1395 - -
Ssu4g2458 1702 MobiDBLite consensus disorder prediction 1435 1462 - -
Ssu4g2458 1702 MobiDBLite consensus disorder prediction 1076 1095 - -
Ssu4g2458 1702 MobiDBLite consensus disorder prediction 1148 1177 - -
Ssu4g2458 1702 MobiDBLite consensus disorder prediction 1076 1097 - -
Ssu4g2458 1702 Gene3D - 1612 1701 - -
Ssu4g2458 1702 Gene3D - 103 215 - -
Ssu4g2458 1702 MobiDBLite consensus disorder prediction 1365 1395 - -
Ssu4g2458 1702 PANTHER WASP-1 552 930 IPR028288 GO:0005856|GO:0030036
Ssu4g2458 1702 PANTHER WASP-1 1401 1702 IPR028288 GO:0005856|GO:0030036
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2458 Ssu-Chr4 61671772 61678987 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2458 - - gmx:100814240 2650.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2458 4 61671772 61678987 Ssu4g2458 4 61671772 61678987 ECH
Ssu3g1022 3 24066003 24067066 Ssu4g2458 4 61671772 61678987 PCT