Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1022 ATGGTATTGAATCCAAGTCCATGCCCATCATCACTGCCTGCTGAATGTGTTGTTGCTGGGGTTGAtcccatttttcaacaagaaaAACCAACTATATCTCCAAGTCAATTAACAGAAGGTACCGACTTTGAAGTTAAAAAGGAGAGACCTGGAGAATTGCATTTGGAGCAACCTGTAGAATATCCAGCTTCTGGAGATGATCCCATTTCTCCAAAAGAGAAACCAACACAATCTCCAAGTCAGTTAATGGAGGAGACTAGTTTAGAAGCTAAAACTCTTAAGCAGTCTTCGATTAATCTGGAAAGGGAACAAGGAGATCCTTCAATCTCACCCATGTCACCTCCAAGTCTAGAAATTAAGCAGCAGACCGATCACAGCCTGCTGCCTTCAGAGGGAGAAATGGCGTCTCCATTGGAAACATCTGCTCAAACATTTGATCGTGATATTGAGATGCCAAATGGAAAACCAAAGAATAAGCGTCCTCTTCCCCAGGACGATCCTGTAATTGATCCAATTGCTGCTCTAGACAAAAGCAGGCTGAGGAAGGTCACTGAACGTGTTATGCCCCCCAGAGCACCAAAGGGAGATGAAAGAGACTCACTGTTAGAAATGATAAGAACGAAGTCGTTCAACTTGAGGCCTGCTGGGGTTAACCGACCACCCAGCATTCAGGGTCCAAAAACGAACTTGAGGGTTGCTGCCATCCTAGAAAAAGCAAATGCAATTCGCcagGCATTGGCTGGaagtgatgaagatgatgatgcaGATACTTGGAGTGATGCTTGA 786 0.4249 MVLNPSPCPSSLPAECVVAGVDPIFQQEKPTISPSQLTEGTDFEVKKERPGELHLEQPVEYPASGDDPISPKEKPTQSPSQLMEETSLEAKTLKQSSINLEREQGDPSISPMSPPSLEIKQQTDHSLLPSEGEMASPLETSAQTFDRDIEMPNGKPKNKRPLPQDDPVIDPIAALDKSRLRKVTERVMPPRAPKGDERDSLLEMIRTKSFNLRPAGVNRPPSIQGPKTNLRVAAILEKANAIRQALAGSDEDDDADTWSDA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1022 261 Coils Coil 83 103 - -
Ssu3g1022 261 PANTHER WASP-1 2 260 IPR028288 GO:0005856|GO:0030036
Ssu3g1022 261 MobiDBLite consensus disorder prediction 41 55 - -
Ssu3g1022 261 MobiDBLite consensus disorder prediction 29 177 - -
Ssu3g1022 261 MobiDBLite consensus disorder prediction 71 129 - -
Ssu3g1022 261 MobiDBLite consensus disorder prediction 150 164 - -
Ssu3g1022 261 PANTHER WH2 DOMAIN, SCAR/WAVE FAMILY PROTEIN-RELATED 2 260 - -
Ssu3g1022 261 Gene3D - 170 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1022 Ssu-Chr3 24066003 24067066 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1022 - - gmx:100819788 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1022 3 24066003 24067066 Ssu3g1022 3 24066003 24067066 ECH
Ssu3g1022 3 24066003 24067066 Ssu4g2458 4 61671772 61678987 PCT