Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2456 ATGGAGAGCGGCGTTGGGGGAGAGAGGAGTGGGCGCGTGGCGCTGTCGGAGGTGGTGGCGGATTGTGTGAAGCGGTGGTTCAGAGACGCACTGAAAGAAGCCAAGGCAGGGGACATAAACATGCAGGTGTTGGTGGGTCAGATGTACTACAGTGGCTATGGGGTTCCCAGAGATGCTCAGAAGGGAAGAGTTTGGCTGACCAAAGCATCAAGGACTAAGTCTTCGGTTTGGAAAGTAGGTGATAAGCACCCAGGTTATAATGCAAGTGACTCTGATTCGGATGAATTGAAGGAGGATTCTTAA 303 0.5215 MESGVGGERSGRVALSEVVADCVKRWFRDALKEAKAGDINMQVLVGQMYYSGYGVPRDAQKGRVWLTKASRTKSSVWKVGDKHPGYNASDSDSDELKEDS 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2456 100 Gene3D Tetratricopeptide repeat domain 5 86 IPR011990 GO:0005515
Ssu4g2456 100 PANTHER EXPRESSED PROTEIN 2 100 - -
Ssu4g2456 100 SUPERFAMILY HCP-like 26 71 - -
Ssu4g2456 100 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 2 100 - -
Ssu4g2456 100 SMART sel1 39 74 IPR006597 -
Ssu4g2456 100 MobiDBLite consensus disorder prediction 78 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2456 Ssu-Chr4 61663890 61665717 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2456 - - gmx:100527831 175.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1023 3 24072560 24073982 Ssu4g2456 4 61663890 61665717 PCT