Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1023 ATGGAGAGCAGCAGTGGGAGAGAGAGCACGGGGCGTGTGCCACTGTCAGGGGTGGTGGCAGATTGTGTGAAACGGTGGTTCAAAGACACTCTCAAGGAGGCTAAGGCAGGTGATGTCAACATGCAGGTCTTGGTTGGTCAGATGTACTATCATGGCTATGGTGTTCCCAGAGATGGTCAGAAGGGAAGAATTTGGCTGACTAAAGCGTCGAGGGTTAGGTCTTCAGTTTGGAGAGTTGGTGGTAAACGTCCAGGTTATAATGCAAGCGATTCTGAGTCTGACGAATTACAAGATTCTTAA 300 0.4933 MESSSGRESTGRVPLSGVVADCVKRWFKDTLKEAKAGDVNMQVLVGQMYYHGYGVPRDGQKGRIWLTKASRVRSSVWRVGGKRPGYNASDSESDELQDS 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1023 99 SMART sel1 39 74 IPR006597 -
Ssu3g1023 99 Gene3D Tetratricopeptide repeat domain 23 85 IPR011990 GO:0005515
Ssu3g1023 99 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 1 97 - -
Ssu3g1023 99 SUPERFAMILY HCP-like 31 70 - -
Ssu3g1023 99 PANTHER EXPRESSED PROTEIN 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1023 Ssu-Chr3 24072560 24073982 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1023 - - gmx:100527576 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1023 3 24072560 24073982 Ssu3g1023 3 24072560 24073982 ECH
Ssu3g1023 3 24072560 24073982 Ssu4g2456 4 61663890 61665717 PCT