Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2452 ATGGAAGACCAGAAAGAGAAGATGTCAGCTTCCAATGATTCAGTAGTGAACATTGTCGTGCAGCCAGAGCCGTCCGAGCCGAGTACGGACAACCACACGCCGGCAACTAGTGGCGACATCGTCGGGGTGCTGTGGCGGTGGAAGAGGAAAGATACACTAAAGAGAGGGTCCTTGGGGTTGAGAGGAATTgctctatttttatctttggttTCCTTCATCATTATGGCTAGTAACAAGCATGGTGATTGGAAAGAATTTGACAAGGACCAAGAATATAGGTACTTGCTGGCTATAGCAATTCTATCTAGTTTGTACACTGGAGTTCAAGTGTTTCACCAAGTTCATGAACTTTCCATTGGGAAAAACATGATCCAGCCAAGAATTGCAGGgttgattgatgttgttggacaTCAAGTTGTGGCATATCTCCTGATATCATCAACATCTTCAGCGATTCCAATAACTGACAGAATGAGGGAAACCATAGACAATATATTTACGGGCTCTTCAGCTGCCGCCATTGGCttcttttttgcctttttgtttcTAGCACTGTCTGCTGTCATATCAGGATACAAACTATCTACCGAAACTTATATATGA 603 0.3997 MEDQKEKMSASNDSVVNIVVQPEPSEPSTDNHTPATSGDIVGVLWRWKRKDTLKRGSLGLRGIALFLSLVSFIIMASNKHGDWKEFDKDQEYRYLLAIAILSSLYTGVQVFHQVHELSIGKNMIQPRIAGLIDVVGHQVVAYLLISSTSSAIPITDRMRETIDNIFTGSSAAAIGFFFAFLFLALSAVISGYKLSTETYI 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2452 200 MobiDBLite consensus disorder prediction 1 35 - -
Ssu4g2452 200 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 23 199 - -
Ssu4g2452 200 PANTHER CASP-LIKE PROTEIN 4B1 23 199 - -
Ssu4g2452 200 Pfam Casparian strip membrane protein domain 52 176 IPR006702 -
Ssu4g2452 200 MobiDBLite consensus disorder prediction 10 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2452 Ssu-Chr4 61546877 61549259 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2452 - - gmx:100527392 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2452 4 61546877 61549259 Ssu4g2452 4 61546877 61549259 ECH
Ssu3g1026 3 24102536 24104447 Ssu4g2452 4 61546877 61549259 PCT