Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1026 ATGTCGAATCTGGACGGCAATTCGTCGCCGAAGATACACGTTGAGACTCCGCCAGTGGCGGCTTCCGCGCCGAGTGAGGACCACCATACGCCGGCGACCCGCGCCGCTGGAATCGGCGGAATCCTGCGGCGGTGGAAGAGGGAGGACTTGATGAAGAGAGGGTCGTTGGCATTGAGAGGGATCGCTTTGCTTTTCTCTCTGATTTCGTTCGTTGTCATGGCCAGCAATACACACGGCGATTCGAGAGATTTCGATAAATATGAAGAGTACAGGTATTTGCTGGCTGTAGCGATTTTGTCTAGCTTGTACACTGGAGGCCAAGTGTTCCGTCAAGTTCAGGAACTATCCACTGCAAAACAATTGCTTCAGCCAAGAATGGCAGCTATGATTGACTTTTTCGGTGATCAGATCATTGCATATCTTTTGATATCATCAGCATCTTCAGCAGTTCCAATAACAAATAGAATGAGGGAAGGGGCAGACAATATATTTACAGACTCTTCATCTGCAGCCATTAGCATGTCTATTTTTGCCTTCTTGTGTCTAGCAGCGTCAGCCCTCATTTCAGGCTACAAACTATCAACTCAACCTTATATCTGA 600 0.48 MSNLDGNSSPKIHVETPPVAASAPSEDHHTPATRAAGIGGILRRWKREDLMKRGSLALRGIALLFSLISFVVMASNTHGDSRDFDKYEEYRYLLAVAILSSLYTGGQVFRQVQELSTAKQLLQPRMAAMIDFFGDQIIAYLLISSASSAVPITNRMREGADNIFTDSSSAAISMSIFAFLCLAASALISGYKLSTQPYI 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1026 199 Pfam Casparian strip membrane protein domain 51 181 IPR006702 -
Ssu3g1026 199 MobiDBLite consensus disorder prediction 1 33 - -
Ssu3g1026 199 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 23 198 - -
Ssu3g1026 199 PANTHER CASP-LIKE PROTEIN 4B1 23 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1026 Ssu-Chr3 24102536 24104447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1026 39 159 Miscellaneous Gene Families AT1G79780 24.242 2.94e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1026 - - gmx:100818718 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1026 3 24102536 24104447 Ssu3g1026 3 24102536 24104447 ECH
Ssu3g1026 3 24102536 24104447 Ssu4g2452 4 61546877 61549259 PCT