Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2442 ATGATGGACACTGCTTCCTCCCCCATGTCCCTCCAAAACCAAAAGACAACCTTCCAGGACCTTCCGGAGGCTTCCCCCAAGCCATACAAGAAGGGCTTTGTGGCCACCCTAATGGGAGCCTCCACCCCTTCCTTCAAAGAGGACAACTACTTTGTGTCCCTCCTCAGGTCCTCAGAGAGAAAGGCCCTTCAGGAGCTAAAAGACAAGCTCAAAGCCTCCTTTGATGACTCTCCCTCTGATGCCTCCATGTGGGGCATTCCCCTCCTTGGTGTTGGTGGAGATGAAAGGGCTGATGTCATTCTCCTCAAGTTTCTCAGAGCAAGGGACTTCAGGGTTGGTGATGCCCTCCACATGCTCCTCAAGTGCCTGGCTTGGAGGAAGGAGTTTGGTGCTGACACCATTCTGGAGGAAGAGTTGGGGTTCAAGGAGCTTGAAGGGGTCATAGCATATATGCAAGGGTGTGATAGAGAGGGCCACCCTGTGTGCTACAATGCCTATGGGATGTTCAAAGACAAGGAAATGTATGAGAGGGTCTTTGGGGATGAGGAGAAGCTCAAGAAGTTCCTCAGGTGGAGGGTTCAGGTCCTTGAGAGAGGCATCAAGGTTCTCCATTTCAAGCCTGGTGGGGTCAATTCTCTCATTCAGGTCACTGACCTCAAGGACATGCCCAAGAGAGAGCTGAGGGTGGCCTCTAACCAGATCCTCTCCTTGTTCCAAGACAACTACCCGGAAATGGTGGCTCGCAAGATTTTCATCAACGTGCCGTGGTACTTCAGCATGTTGTATTCAATGTTCAGTCCGTTTCTGACTCAAAGAACCAAGAGCAAGTTTGTGATCTCTAAGGAAGGAAATGCTGCGGAGACACTCTACAAATTTATGAGGCCTGAGGACATTCCTGTTCAGTATGGAGGACTGAATCGGTCCAGTGATTTGCAGAATGGTCCCCCGAAACCTGCATCTGAGTTCACAATCAAAGGAGGGGAGAAAGTGAACATACAAATAGAAGGAATTGAGGCTGGTGCAACTATCACATGGGACATTGTGGTGGGAGGGTGGGACTTGGAATACAGTGCTGAGTTTGTGCCAAATGCTGAAGGAAGCTACACCATAGCAGTTGAAAAGCCAAGGAAGATGGGGGCCTCAGAAGAAGCAATCCACAACTCGTTCACATCAAAAGAATCTGGCAAAATGGTACTCTCAGTTGATAACACTGCTTCAAGGAGGAAAAAGGTTGCAGCATATCGCTATGTTGTCCGCAAAAGCAGCACCATTTGA 1275 0.4949 MMDTASSPMSLQNQKTTFQDLPEASPKPYKKGFVATLMGASTPSFKEDNYFVSLLRSSERKALQELKDKLKASFDDSPSDASMWGIPLLGVGGDERADVILLKFLRARDFRVGDALHMLLKCLAWRKEFGADTILEEELGFKELEGVIAYMQGCDREGHPVCYNAYGMFKDKEMYERVFGDEEKLKKFLRWRVQVLERGIKVLHFKPGGVNSLIQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFMRPEDIPVQYGGLNRSSDLQNGPPKPASEFTIKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKMGASEEAIHNSFTSKESGKMVLSVDNTASRRKKVAAYRYVVRKSSTI 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2442 424 Gene3D - 130 315 IPR036865 -
Ssu4g2442 424 MobiDBLite consensus disorder prediction 1 25 - -
Ssu4g2442 424 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 321 420 IPR036598 -
Ssu4g2442 424 Pfam CRAL/TRIO domain 145 304 IPR001251 -
Ssu4g2442 424 PANTHER PATELLIN-6 15 422 - -
Ssu4g2442 424 SUPERFAMILY CRAL/TRIO domain 142 308 IPR036865 -
Ssu4g2442 424 Pfam CRAL/TRIO, N-terminal domain 63 120 IPR011074 -
Ssu4g2442 424 ProSiteProfiles GOLD domain profile. 286 420 IPR009038 -
Ssu4g2442 424 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 136 310 IPR001251 -
Ssu4g2442 424 SMART CRAL_TRIO_N_2 97 122 IPR011074 -
Ssu4g2442 424 MobiDBLite consensus disorder prediction 1 21 - -
Ssu4g2442 424 SUPERFAMILY CRAL/TRIO N-terminal domain 57 138 IPR036273 -
Ssu4g2442 424 SMART sec14_4 143 307 IPR001251 -
Ssu4g2442 424 Gene3D GOLD domain 316 418 - -
Ssu4g2442 424 Gene3D - 53 128 - -
Ssu4g2442 424 PANTHER PATELLIN-1 15 422 IPR044834 GO:0008289
Ssu4g2442 424 CDD SEC14 141 305 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2442 Ssu-Chr4 61360328 61362380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2442 101 299 Acyl Lipid Metabolism Gene Families AT1G55840 27.230 1.71e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2442 - - gmx:100809944 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2442 4 61360328 61362380 Ssu4g2442 4 61360328 61362380 ECH
Ssu3g1034 3 24224247 24227350 Ssu4g2442 4 61360328 61362380 PCT