Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1034 ATGCAGAGATTCCCTCATTCCCCATCGATGGACACCCCTCCCTCTTCCACACCCTTCCTGCACCTCCCCGAACCACCTTCCCCCAAGCCCTCCAGGAAAAGCATCTTCACCGCCCCATCCTACAAAGAAGACACCTACTTCGCGTCCCACCTCAAACCCTCCGAGAAGAAGGCCCTCCAGGACCTCAGGGACAAGCTCCTCGCTTCCTCCGACCCCTCCCCTTCGATGTGGGGCGTCCCCTTGCTCGGCAACGACGACGACAGAGCCGACGTGCTGCTTCTGAAGTTCCTCCGGGCGCGCGACTTCCGGGTCCACGACGCGCTCCCCATGCTCCTCAAGTGCCTGTCCTGGAGGGCCGAGTTCGGAGCCGACAGCGTTGTCGACGAGGAGCTGGGGTTCGAGGAGCTCGAGGGGGTGGTGGCGTACACCCGCGGGCACGACAGGGAGGGGCACCCCGTGTGCTACAACGCGTATGGGGTGTTCAAGGATCGGGACATGTATGAGAGGGTGTTTGGGGACGAGGAGAAGCTGAGGAAGTTCTTGAGGTGGAGGGTTCAGGTGCTGGAGAGGGGGATCAAGCTGCTTCACTTCAAGCCCGGCGGGGTCAACTCGCTGATTCAGGTCACGGACCTTAAGGACATGCCCAAGAGAGAACTCAGGGTCGCCTCTAACCAAATCCTGTCCTTGTTCCAGGATAATTACCCTGAAATGGTGGCTCGTAAGATTTTCATCAATGTACCCTGGTACTTCAGCGTGTTGTATTCGATGTTCAGTCCGTTTCTGACCCCAAGAACTAAGAGCAAGTTTGTGATCTCTAAGGAAGGAAATGCTGCAGAGACACTCTACAAatttataagGCCCGAGAATATTCCTGTTCGGTATGGTGGATTGAGTCGACCCGGCGATTTGGAGGATGGTCCCCCAAAACCTGCTTCGGAGTTCACTGTTAAAGGGGGAGAGAAAGTGAACATACAAATAGAAGGAATTGAGAGTGGTGCAACTATCACGTGGGATATTGTGGTGGGAGGCTGGGACTTGGAATACAGTTCTGAATTTGTCCCAATAGCTCTAGGTAGCTACACCTTAGCAGTTGATAAGGCAAGGAAGATTGAGGCCTCAGAAGAAGCAATCCATAACTCTTTCACATCAAAAGAAGCTGGCAAATTGGTACTCTCTGTTGATAACTCTGCCtcaaggaagaaaaaagttgcTGCTTATCGCTATGTTGTCCACAAATGCAGCACACCATCTGAGGTGCAATTAAGCCCCAAATAA 1275 0.5286 MQRFPHSPSMDTPPSSTPFLHLPEPPSPKPSRKSIFTAPSYKEDTYFASHLKPSEKKALQDLRDKLLASSDPSPSMWGVPLLGNDDDRADVLLLKFLRARDFRVHDALPMLLKCLSWRAEFGADSVVDEELGFEELEGVVAYTRGHDREGHPVCYNAYGVFKDRDMYERVFGDEEKLRKFLRWRVQVLERGIKLLHFKPGGVNSLIQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSVLYSMFSPFLTPRTKSKFVISKEGNAAETLYKFIRPENIPVRYGGLSRPGDLEDGPPKPASEFTVKGGEKVNIQIEGIESGATITWDIVVGGWDLEYSSEFVPIALGSYTLAVDKARKIEASEEAIHNSFTSKEAGKLVLSVDNSASRKKKVAAYRYVVHKCSTPSEVQLSPK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1034 424 MobiDBLite consensus disorder prediction 1 35 - -
Ssu3g1034 424 Pfam CRAL/TRIO domain 137 296 IPR001251 -
Ssu3g1034 424 Gene3D GOLD domain 309 410 - -
Ssu3g1034 424 MobiDBLite consensus disorder prediction 1 16 - -
Ssu3g1034 424 CDD SEC14 140 297 IPR001251 -
Ssu3g1034 424 Gene3D - 48 120 - -
Ssu3g1034 424 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 313 418 IPR036598 -
Ssu3g1034 424 PANTHER PATELLIN-6 36 413 - -
Ssu3g1034 424 ProSiteProfiles GOLD domain profile. 278 412 IPR009038 -
Ssu3g1034 424 Gene3D - 128 308 IPR036865 -
Ssu3g1034 424 SUPERFAMILY CRAL/TRIO N-terminal domain 35 129 IPR036273 -
Ssu3g1034 424 SMART CRAL_TRIO_N_2 89 114 IPR011074 -
Ssu3g1034 424 SUPERFAMILY CRAL/TRIO domain 134 299 IPR036865 -
Ssu3g1034 424 SMART sec14_4 135 299 IPR001251 -
Ssu3g1034 424 Pfam CRAL/TRIO, N-terminal domain 50 112 IPR011074 -
Ssu3g1034 424 MobiDBLite consensus disorder prediction 18 32 - -
Ssu3g1034 424 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 129 302 IPR001251 -
Ssu3g1034 424 PANTHER PATELLIN-1 36 413 IPR044834 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1034 Ssu-Chr3 24224247 24227350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1034 93 291 Acyl Lipid Metabolism Gene Families AT1G55840 26.291 7.60e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1034 - - gmx:100814996 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1034 3 24224247 24227350 Ssu3g1034 3 24224247 24227350 ECH
Ssu3g1034 3 24224247 24227350 Ssu4g2442 4 61360328 61362380 PCT