Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2439 ATGTTTGTGGGGTTATTAGCAGTGGGAAGACACAGAATTCAGTGTTCTGTGTCTCATGCTAAACTTTGGGCTCTCGTGTGTGGGCTTCACATTACTGTTGAGAATGGGTTTCGTAGTTTGGAAATCGAGTCCGACTCGCTCACTGCGGTCAAGCCCTTCCGTGTCTCACAAAAACCTGTTTCAAGTGTCTCTCTTTCGCTTCCAATTACTTTGCTTTCTTTTCTGATCATTGTTTTCGTTTGGATGAGGGCAGGGAGGAGAACACAAACTTACAATATCAGTAGGACTATACCTTTTTCTCCAAATTCAGTGGTCAGTTCTGTAGGAGGCAGAAATTTGGGGAAGTATCAACTTGGTGGGGTCATATTTGGTTGCAAAAACAGTACAATGAAAGAATGTCAATCAAAACAACTCTTTGGCTTACCAGCTCCACACTTTTCCTATGTGAAGAATATTGATCCTGGCCTGCCTATCTTTTTATTCAACTATAGTGACAGGAAGCTCCATGGAATTTTTGAGGCATCTAGCAAGGGGCAAATGTATATAGACCCTTATGCATGGATTGATGATTATTCAGAATTGGATAGAACACAATATCCTGCACAGgtgAAAATTCGCGTCCGGCTTCAGTGCCAGCCACTGTCTGAAGATAAATTTGCACAAGTAATTGCAGACAACTACTACACCACTAACCATTTCTGGTTTGAATTAGACCATAGACAAGCAAGCAAGCTCACTTCATTACTAGCTTCTTTAGCATTTGCCCCTGGTTGTAATTTGAAGTGGAGAATTGTATCTCCATCTCTTCCATCAACTATGAAGGAAGGTGAAGCATTTGAAACACCTGAATCAAAGACACAACATTTAACTAGCTCAAGTAGGAGAACAGATTCCACTGAAATTACTTCTTCTTTAGATGGAGACATGAAGCCATTGGATACCCAGGCAGTAGTGAAGGAGGTGAATGAGAATGAGATGAACCTTATATATGTGAAACTAAAGGAATTGTCTCTTGGCCATGAAAGCCAAAACCTCTCTATGTCAGAAAATGTAAATGACACTCCTGATGAGAATGATATGTGCACTGTGGAAAAGGATGATCTGGAGGTGGCAGCAGGTTTAGAGGAGAAGGAAGAGAGTTCAAGTCCTTCAGTTGAGCATCAAAACAACATTGGCCAGTTGATGCAAGAAGTTGAAGAACTGATGGCTTTGAAGAAAACACTAACACAGAAAAATTGTTACCTGGAGCAGAAGCTGAGGGAGGCAGAATTGGAAATTCAGCATCTAAAGGATCGTTGTACAATGTTAGAATCAACATTTAATCTTCCTCTGACACATGTTGGGAACACAGTCATTCAGTCATCTGCtatagagtcattatttttaaaagtgaattttgatgGAGAATCATGGTTGTCAACTGTGGATTTTTATTGTCCTTCCCAGAATGTGATCAAATCTCTCTATCCTATGAACTCAGCTCACTCATATCCTTCAATAACACAGCTAAACGttGGATCATACAGTCCAATTCTCAACAAGTGGACCTTATACCCCTCTTTGAATCAGAAGAAAGGAAGCTTGGCAGTAGTTTCTTTGaccaacaaaatatttgttgttgatGATGCCAATGGAATTGACAGCTTTTCAGATGTTGGGGTGTTTGATTTAGACATTGGAAGGTGGACCTCCGCACGTTCAATGCTAGACAAGaGTTGTGCTCTTGCTGCCGGGGAACTGAATGGTTTGCTTTATACTACTACTGGATATAATGGATTTGGCTATTTGAAGTTTGCTCTTGGTGGCTTTGATAAAAGCAGAATGATTCCAAGTATTAAAGTAATTGATTCTTCTTTTGACATGGATGATGGAGAAACTAATGAAAGGAAAACTTCACTGATATTGTCAAGGAATATATCTGTGATTGGGGAAGTCAAGGTTAACAAGAACATTGTACATACATTAATCTAA 1971 0.3896 MFVGLLAVGRHRIQCSVSHAKLWALVCGLHITVENGFRSLEIESDSLTAVKPFRVSQKPVSSVSLSLPITLLSFLIIVFVWMRAGRRTQTYNISRTIPFSPNSVVSSVGGRNLGKYQLGGVIFGCKNSTMKECQSKQLFGLPAPHFSYVKNIDPGLPIFLFNYSDRKLHGIFEASSKGQMYIDPYAWIDDYSELDRTQYPAQVKIRVRLQCQPLSEDKFAQVIADNYYTTNHFWFELDHRQASKLTSLLASLAFAPGCNLKWRIVSPSLPSTMKEGEAFETPESKTQHLTSSSRRTDSTEITSSLDGDMKPLDTQAVVKEVNENEMNLIYVKLKELSLGHESQNLSMSENVNDTPDENDMCTVEKDDLEVAAGLEEKEESSSPSVEHQNNIGQLMQEVEELMALKKTLTQKNCYLEQKLREAELEIQHLKDRCTMLESTFNLPLTHVGNTVIQSSAIESLFLKVNFDGESWLSTVDFYCPSQNVIKSLYPMNSAHSYPSITQLNVGSYSPILNKWTLYPSLNQKKGSLAVVSLTNKIFVVDDANGIDSFSDVGVFDLDIGRWTSARSMLDKSCALAAGELNGLLYTTTGYNGFGYLKFALGGFDKSRMIPSIKVIDSSFDMDDGETNERKTSLILSRNISVIGEVKVNKNIVHTLI 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2439 656 Coils Coil 419 439 - -
Ssu4g2439 656 SUPERFAMILY Kelch motif 467 597 IPR015915 GO:0005515
Ssu4g2439 656 Pfam Development and cell death domain 119 248 IPR013989 -
Ssu4g2439 656 Pfam Reverse transcriptase-like 15 52 IPR002156 GO:0003676|GO:0004523
Ssu4g2439 656 ProSiteProfiles DCD domain profile. 116 251 IPR013989 -
Ssu4g2439 656 MobiDBLite consensus disorder prediction 283 309 - -
Ssu4g2439 656 SMART dcd 116 251 IPR013989 -
Ssu4g2439 656 Gene3D - 447 628 IPR015915 GO:0005515
Ssu4g2439 656 PANTHER INFLUENZA VIRUS NS1A-BINDING PROTEIN 101 597 - -
Ssu4g2439 656 Coils Coil 384 411 - -
Ssu4g2439 656 PANTHER - 101 597 IPR044832 GO:0034976
Ssu4g2439 656 MobiDBLite consensus disorder prediction 273 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2439 Ssu-Chr4 61010385 61024307 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2439 - - gmx:102660492 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2439 4 61010385 61024307 Ssu4g2439 4 61010385 61024307 ECH
Ssu3g1037 3 24292318 24299312 Ssu4g2439 4 61010385 61024307 PCT