Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1037 ATGGCGGGGGCATGGAAGAAAACACAAACTTCTCAATTCAGTGGGACTCAAGCTTTCTCTCCAAATTTAGCATGTGGCAGAAATTTGACGAAGAATCAACTTGGTGGTGTCATCTTTGGATGTAAGAACGCCACAATGAAGGAATGTCTATCTAAACAACTCTTTGGCTTACCAGCTCAGCACTTCTCTTATGTGAAGAATATTGATCCAGGGTTGCCTCTGTTTCTGTTTAATTATACTGACAGGAAGCTTCATGGAATTTTTGAGGCAGCTAGCAGTGGGAGAATGTTTATAGACCCCTATGGATGGACTACTGATGGTTCAGAAAGAACGCAATATCCTGCGCAGgtgCAAATTTGTGTCCGACTTCAGTGCCAGCCGCTATCTGAAGATAAATTTAAACAAGTAATTGCAGACAACTACTACACTCATAACCATTTCTGGTTTGAAGTAGACCATGGACAAACAAGCAAACTTATTTCCTTACTATCATCTGGAGCAATTGCCTCTGGTAATTCTGTCCCTCAGAATACACAGAAGTGGATAACTGCATCTCGTTCTCTTGCATCACACGAAACTCCGAGGGAAGGTGAAACATCTAAAATGCTTGAATTAGAGACAGAGCATTCTACTCACTCAAGTACAAGATCTGATTTGACTGAAAATGATCTTTTTTTAGATGGAAACATCTGGCCATTAGATACTAATGAGGTTGAGAATGAAGTAAGAGAGGATGAGAAGAACAGCATATTTATGAAACTAAAGGAATTAACTCTTAACAGTGAAAGTCAAGATCTATCTTTGGCAAACAATGTCAATGATATTCCTGATATGGATAACACAGAAAAGGGTTATATGGAGGCGTTGGCTGGTTTAGATAAGAAGGAAGAGAGTTCTAATCCTCCATTTGAGTATCAATACAACATAGCTCAGtTGGTGCAAGAGGTTAAAGAATTgacaaatttcaagaaaatacaAACAGAGAGGAATTGCTACCTGGAACAGAAGCTGATTGAGGCAGAAATGGAAATTCGGCATCTAAAAGATCGTTGTACACTTTTAGAATCTGCATGTAATATTCCTAATCATCTGACACATGTTGAGAAGACAGTAATAAAGTCGACTGCTGAGCTGCATTTAGATCCCGaagattcattatttttaataggaGGCTTTGATGGAAAATCATGGTTAGCAACTATGGATTTGTATTGTGCTTCTCAGAATGTGATCAAATCTTTTAAGCCTATGAGTTCAGTTCGTTCATATGCTTCAGTTGTGCGGTTGAATggtgaaatttttgtttttggtggtgGAAATGGTTATGTTTGGTATGACACAGTTGAATCATACAATCCAGTTCATGACAACTGGACGTTGTGCCCCTCTTTGAACCAGAAGAAAGGAAGCTTGTCTGGAGCTGCTTTGAATGACAAAATATTTGCTGTTGGTGGTGGCAATGGAGTTGACTGCTTTTCTGATGTTGAGATGCTTGACTTAGATATTGGGCGGTGGATCCCTACACGCTCAATGCTAGAGAAGAGATTTGCTCTTGCTGCAGTGGAACTTAATGGTGTGATTTATGCCACTGGCGGATTTGATGGAAATGATTACTTAAGGTCTGCTGAAAGATTTGATCCCAGGGAACATTCTTGGACCAAAATACCAAACATGAATGTAAAGCGGGGCTGCCATTCATTAGTTGTTCTAAATGAAAAGTTGTATGCGCTTGGTGGCTTTAATGGAGACAAAATGGTTCCAAGTATCGAAGTGTTTGATCCTCGTCTTGGGGCATGGACAATGGGGGAACCAATGAATCATCCTAGGGGGTATTCTGCTGCTGTAGTTGTCAAGGAATCCATTTATATGATTGGAGGAGTTAAAGTTGGAGAGAACATTGTAGATGCAGTTGAGAATTATAAGAAAGATCAGGGATGGAAGGAAACTTGCCCAACAGCAGCTGTTAAAAGGTGTTTCTTGTCAGCTATTGCCTGCAGTCATCAGTGA 2007 0.3891 MAGAWKKTQTSQFSGTQAFSPNLACGRNLTKNQLGGVIFGCKNATMKECLSKQLFGLPAQHFSYVKNIDPGLPLFLFNYTDRKLHGIFEAASSGRMFIDPYGWTTDGSERTQYPAQVQICVRLQCQPLSEDKFKQVIADNYYTHNHFWFEVDHGQTSKLISLLSSGAIASGNSVPQNTQKWITASRSLASHETPREGETSKMLELETEHSTHSSTRSDLTENDLFLDGNIWPLDTNEVENEVREDEKNSIFMKLKELTLNSESQDLSLANNVNDIPDMDNTEKGYMEALAGLDKKEESSNPPFEYQYNIAQLVQEVKELTNFKKIQTERNCYLEQKLIEAEMEIRHLKDRCTLLESACNIPNHLTHVEKTVIKSTAELHLDPEDSLFLIGGFDGKSWLATMDLYCASQNVIKSFKPMSSVRSYASVVRLNGEIFVFGGGNGYVWYDTVESYNPVHDNWTLCPSLNQKKGSLSGAALNDKIFAVGGGNGVDCFSDVEMLDLDIGRWIPTRSMLEKRFALAAVELNGVIYATGGFDGNDYLRSAERFDPREHSWTKIPNMNVKRGCHSLVVLNEKLYALGGFNGDKMVPSIEVFDPRLGAWTMGEPMNHPRGYSAAVVVKESIYMIGGVKVGENIVDAVENYKKDQGWKETCPTAAVKRCFLSAIACSHQ 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1037 668 SUPERFAMILY Kelch motif 476 665 IPR015915 GO:0005515
Ssu3g1037 668 Gene3D - 368 535 IPR015915 GO:0005515
Ssu3g1037 668 Gene3D - 536 668 IPR015915 GO:0005515
Ssu3g1037 668 PANTHER INFLUENZA VIRUS NS1A-BINDING PROTEIN 16 665 - -
Ssu3g1037 668 Pfam Kelch motif 473 511 IPR006652 GO:0005515
Ssu3g1037 668 Pfam Kelch motif 421 465 IPR006652 GO:0005515
Ssu3g1037 668 Pfam Kelch motif 518 559 IPR006652 GO:0005515
Ssu3g1037 668 Pfam Kelch motif 562 606 IPR006652 GO:0005515
Ssu3g1037 668 PANTHER - 16 665 IPR044832 GO:0034976
Ssu3g1037 668 SUPERFAMILY Galactose oxidase, central domain 381 488 IPR011043 -
Ssu3g1037 668 ProSiteProfiles DCD domain profile. 32 165 IPR013989 -
Ssu3g1037 668 Coils Coil 337 357 - -
Ssu3g1037 668 SMART kelc_smart 573 619 IPR006652 GO:0005515
Ssu3g1037 668 SMART kelc_smart 432 478 IPR006652 GO:0005515
Ssu3g1037 668 SMART kelc_smart 479 525 IPR006652 GO:0005515
Ssu3g1037 668 SMART kelc_smart 526 572 IPR006652 GO:0005515
Ssu3g1037 668 SMART kelc_smart 385 431 IPR006652 GO:0005515
Ssu3g1037 668 MobiDBLite consensus disorder prediction 185 219 - -
Ssu3g1037 668 Pfam Development and cell death domain 35 162 IPR013989 -
Ssu3g1037 668 MobiDBLite consensus disorder prediction 191 216 - -
Ssu3g1037 668 SMART dcd 32 165 IPR013989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1037 Ssu-Chr3 24292318 24299312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1037 521 632 EF-hand Containing Proteins AT4G39560 32.500 9.15e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1037 - - pvu:PHAVU_008G092000g 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1037 3 24292318 24299312 Ssu3g1037 3 24292318 24299312 ECH
Ssu3g1037 3 24292318 24299312 Ssu4g2439 4 61010385 61024307 PCT