Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1050 ATGGTGCTGCAGGAAGAGAACGAAGAAGCCAAAATGAAAATGGCAAAGACACACCAAATAGTTCTATGGAGTTCTTGGGGAATTAGAAACACCTTTCATTCTCTTATAGCCATCTTAACCACCCTTGTAGTTGTCACTACCATTTATCAAAGACAGGATGGAGGACatttatctcaaaaaataaatgccTCTAATGATTCGACATCGTCAAAGTGTGACTTGTTCTCTGGCAAGTGGGTTTTTGATAACGAATCTTATCCATTATACAAAGAGCACCAATGCACGTTCATGTCAGATCAGTTGGCTTGTGAGAAGTTTGGAAGGAAGGACCTGAGTTACCAGAATTGGAGGTGGCAGCCTCATCAGTGTGACCTTCCTAGGTTCAATGCCACAGTATTGCTTGAAAGGCTAAGGAACAAGAGGCTTGTGTTCGTGGGGGATTCACTCAACAGAGGCCAATGGGTTTCCATGGTTTGCCTTGTTGACTCTATATTGCCCGAAGCCCTCAAATCCATGCATTCCTCTGCCAATGGTTCACTAAACATTTTCAAGGCCAAAGAATACAATGCAACTATTGAGCACTATTGGTCCCCATTACTAGTAGAATCAAACTCAGATGATCCAGTAAACCATAGGGTACCAGAACGCACTGTGAGAGTCAAGGCCATTGAAAAGCACGCCAGGTACTGGACTGATGCAGACTTTCTGGTTTTCAACACTTATCTCTGGTGGAGAAGGCCAGTAATGAATGCTCTGTGGGGTTCGTTTGGAGACCCTGATGGTGTCTACAAAGGAGTTGAAATGTTGAGAGTCTATGAAATAGCCCTTAGGACCTGGTCCGATTGGTTGGAAGTCCATGTCAATCGGAACAAGACCCATTTGTTTTTCGTTAGCATGTCACCCACTCATGAAAGGGCTGAGGAATGGGGAGCAGCTAAGGGTAACAATTGTTACAGCGAAACAGGTATGATTGAAGAAGAGGGGTATTGGGGGAAGGGGTCTGATCCTAAAATGATGCGTGTGGTGGAGATTGTGCTTGGTGATTTGAAAGCCAGaggtttgaatgttcaaatgcTTAACATCACACAGCTCTCAGAATACAGAAAAGAAGGACACCCATCTATCTACAGGAAGCAGTGGGACCCTCTAACCCAAGAACAGATAGCAAACCCAAATAGTTATGCAGATTGCATACATTGGTGCCTCCCTGGAGTGCCTGATGTGTGGAATGAGTTCCTTTATGCCTATATTTTCCGTCAATAA 1263 0.4299 MVLQEENEEAKMKMAKTHQIVLWSSWGIRNTFHSLIAILTTLVVVTTIYQRQDGGHLSQKINASNDSTSSKCDLFSGKWVFDNESYPLYKEHQCTFMSDQLACEKFGRKDLSYQNWRWQPHQCDLPRFNATVLLERLRNKRLVFVGDSLNRGQWVSMVCLVDSILPEALKSMHSSANGSLNIFKAKEYNATIEHYWSPLLVESNSDDPVNHRVPERTVRVKAIEKHARYWTDADFLVFNTYLWWRRPVMNALWGSFGDPDGVYKGVEMLRVYEIALRTWSDWLEVHVNRNKTHLFFVSMSPTHERAEEWGAAKGNNCYSETGMIEEEGYWGKGSDPKMMRVVEIVLGDLKARGLNVQMLNITQLSEYRKEGHPSIYRKQWDPLTQEQIANPNSYADCIHWCLPGVPDVWNEFLYAYIFRQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1050 420 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 18 419 IPR029962 GO:0016413
Ssu3g1050 420 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 125 415 IPR026057 GO:0016740
Ssu3g1050 420 PANTHER PMR5/CAS1P GDSL/SGNH-LIKE ACYL-ESTERASE FAMILY PROTEIN 18 419 - -
Ssu3g1050 420 Pfam PMR5 N terminal Domain 71 124 IPR025846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1050 Ssu-Chr3 24624767 24629066 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1050 - - gmx:100785941 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1050 3 24624767 24629066 Ssu3g1050 3 24624767 24629066 ECH
Ssu3g1050 3 24624767 24629066 Ssu4g2425 4 60587612 60593437 PCT