Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1053 ATGGATGAGATATTGAACAAAGTGGGGTCATACTGGTTCTCCCAGAAGGCCAGCAAGGAGTTTAACTCTGTCGGTGATGATATCAATTCACTTTCAACCAGTATTGAAGGGGGAACCAAATGGTTGGTCAACAAATTAAAAGGAAAGATGCAAAAGCCATTAACGGAGTTGCTAAAGGAGTATGATCTACCCATAGGAATCTTTCCTCGTGATGCCACAAACTACGAATTCAATGAAGAAACAGGAAAGCTTATTGTTTACATTCCTCAAGTGTGCGAAGTCGGCTACAGGGATTCGTCAGTCTTGCGTTTCTCCACCAGTGTGAGTGGTTATTTGGAGAAAGGAAAGCTAGCAGACATAGAGGGAATGAAGACCAAAGTGCTGATCTGGGTAAAAGTGACCATGATTTCATCTGAGGGATCAAAGCTCCATTTCACTGCCGGCATGAAGAAAACAAGGAAAAGGGAAGCATATGAGGTTACTAGAGATGGTGTAACCGTAGataaattctaa 513 0.4191 MDEILNKVGSYWFSQKASKEFNSVGDDINSLSTSIEGGTKWLVNKLKGKMQKPLTELLKEYDLPIGIFPRDATNYEFNEETGKLIVYIPQVCEVGYRDSSVLRFSTSVSGYLEKGKLADIEGMKTKVLIWVKVTMISSEGSKLHFTAGMKKTRKREAYEVTRDGVTVDKF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1053 170 PANTHER T31J12.3 PROTEIN-RELATED 3 170 IPR007493 -
Ssu3g1053 170 SUPERFAMILY At5g01610-like 3 170 IPR036758 -
Ssu3g1053 170 Gene3D - 32 170 IPR036758 -
Ssu3g1053 170 PANTHER DUF538 FAMILY PROTEIN 3 170 - -
Ssu3g1053 170 Pfam Protein of unknown function, DUF538 55 159 IPR007493 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1053 Ssu-Chr3 24680310 24683510 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1053 - - gmx:100305947 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1053 3 24680310 24683510 Ssu3g1053 3 24680310 24683510 ECH
Ssu3g1053 3 24680310 24683510 Ssu4g2423 4 60532241 60535686 PCT