Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2346 ATGAAAGCCCTCACCGGCTCTTGTTCTAAGGCCATCATCGAGACTCTAGGATCCTTGTCTCCCAGAGTTGCACTTCGTGTTTCTGATGGACCCGAATTCTGCTTCTCCCTGCGTTCTAGAAACGACAAAAAGGGATGCAACTTATGGCTCCTGAAACTGGTCCAAAGCAAGGGTATTTACCCAGTTCATGCAGTACCACCAAAAGACCAGGTGGACTTGGAAACTGCAGAGCCTCAAGCTCAACAAAGTGAACAAACAAATGAATCAAAGTTTGTTCGTGTAGCATTTCAGTTACAAAAGAATTGTAACTTTGGCGAACAGTTTCATGTAGTTGGAAATGATCCTATGCTTGGTTCATGGGACCCTATAGATGCATTACCAATGACTTGGTCTGAAGGACATGTATGGACTGTTGAGGTGGATATGCCTGCTGGAAAGTCAATCCAGTTCAAGTTCATACTGAAAGGAAAAGGAGGTAATATTATTTGGCAGCCAGGGTCGGATCGAATGATCCAGACTTGGGAAactataaatagaataattgtTTGTGAAGATTGGGAGAATGCAGAACTTCAGAAAATAATAGAGGAACCTCAGCATGATCAACTTCAGAGAATAATAGAGGAATCCCAGGGTGATCAACTTCAGAAAATAATAGAGGAAGATCAACTTGCTCAACCAAATGAGGAACTCCAGGTTGACTCACAAGTGTCAAGTTTTACAGAAATTTTAGGTAATCCTCAGGAGGATCTGGATTCCAATGCATCCGAAATATCAGGCATTAAAGATACCCAAAATCATGCTGAGGAGAAACCACTTACTGAACCAGTCCTGCAACAAGTCACTGGTGATAGTATTTCTTCCTCAATGGAAAAGCCAATGGCTATTGTTGCTGAAAATATAAGTTACTCAGAGGATCTCATCTGGAGTACAGgccataaaaggaataaaaagaacATGCTTCAAACGAGTGAAGAATCTGCAGATAGTCTGGGAAATGATGACATAATGCCTGATTTTGGACACAGTGGAAGTGCTGCATCACTCAAGAATCAGGAAAGGACAATTGTGGAAAGCAGCTTATTTGATTTTGAAGGAGGTCCAGTTCTTGTACCTGGCTTAATAATACCACCAACTGTGCCAACTGACGAAGCCAGCCAAGGTGAAGTACAAGAAATGACTACTGTGGACACTTCAGTTGGAGCTTTTGAAAGTCAGGATCAGAATATACCAGAGTTCAGTATGGAGCAAGAAACTGATGATGTCACACCCCAAGAGATAAATGCAACCATCAATAATGAGCCAGAGCTGCTGTACAATGAACATGAAGAGCCTCATCTATCCCCAGAAATGGAAGACAGGCCAAACTACGAGCCAGTTGATGATTTCTCAGTTCTTGACCTGCTTTACGCTATGTCAATTGGGCATCGCATAGAGCCGCTCTGGAGCGCGGATACCATCGTCGAGGCTGCATGGTACTCAGAACTTCTCTGCGCGTGA 1500 0.422 MKALTGSCSKAIIETLGSLSPRVALRVSDGPEFCFSLRSRNDKKGCNLWLLKLVQSKGIYPVHAVPPKDQVDLETAEPQAQQSEQTNESKFVRVAFQLQKNCNFGEQFHVVGNDPMLGSWDPIDALPMTWSEGHVWTVEVDMPAGKSIQFKFILKGKGGNIIWQPGSDRMIQTWETINRIIVCEDWENAELQKIIEEPQHDQLQRIIEESQGDQLQKIIEEDQLAQPNEELQVDSQVSSFTEILGNPQEDLDSNASEISGIKDTQNHAEEKPLTEPVLQQVTGDSISSSMEKPMAIVAENISYSEDLIWSTGHKRNKKNMLQTSEESADSLGNDDIMPDFGHSGSAASLKNQERTIVESSLFDFEGGPVLVPGLIIPPTVPTDEASQGEVQEMTTVDTSVGAFESQDQNIPEFSMEQETDDVTPQEINATINNEPELLYNEHEEPHLSPEMEDRPNYEPVDDFSVLDLLYAMSIGHRIEPLWSADTIVEAAWYSELLCA 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2346 499 CDD CBM20 93 186 - -
Ssu4g2346 499 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 86 188 IPR002044 GO:2001070
Ssu4g2346 499 Gene3D Immunoglobulins 89 187 IPR013783 -
Ssu4g2346 499 PANTHER BLR6771 PROTEIN 213 437 - -
Ssu4g2346 499 PANTHER BLR6771 PROTEIN 1 202 - -
Ssu4g2346 499 SUPERFAMILY Starch-binding domain-like 89 184 IPR013784 GO:0030246
Ssu4g2346 499 Pfam Starch binding domain 92 177 IPR002044 GO:2001070
Ssu4g2346 499 SMART CBM_20_2 91 182 IPR002044 GO:2001070
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2346 Ssu-Chr4 57092224 57098055 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2346 - - aprc:113849429 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1143 3 27061110 27062353 Ssu4g2346 4 57092224 57098055 PCT