Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1143 ATGGAAGCCCTCAACAGCTCTTGCTCCAAGGCTATTATTGTTGACCTGCTAGGAACTCATGTTCCTAAATGTGCTCCTCTTGTTTCCAACACACCCAAATTTTCCTTATCCCCGAATGACAAAAAGGGCTGCAACTTCGTGTTCCCCAAACTCGTTCAAAACAAGGGCGTTTTCCCACTTCATGCCGTGCCATCCAAAACTCTGGTGGACTTGGACAGTTTAGTGCTTCAAGCTCAAGAACAGCCAAAGGAACCAAAGACTATTCATGTCACATTTCAGTTGCAACGCAATTGTAAATTTGGGGAACAATTTCTAGTAGTTGGTAATGATCCTTTGTTTGGTTCATGGAACCCTGCAAATGCCATACCAATGACCTGGTCAGAAGGGCATGTGTGGACTGTAAAGATGGGTGTACCTGCTGGAAAATTCCAATTCAAATTCGTTCTGAAAAGAAGAGAAGGTGACATTGTTTGGCAGCCAGGCCCAGACCGAATTATCCACACTTGGGAAGCAATGAACAGAATCACTGTTTATGAGGATTGGGAAGATGTTCTACTTCAGAAAGTAACTGAGGATGGTGAAGTTCCGAACTCAAAAGAGGAAGATCAACTTGCTCAAGCAAATATGGAATTACAGATTGAGTCAGAAATGCCAAATTTTGCTGAGAATTTGGGTCGTCCTAAAGAAAAGCCGAAATCCAATGCTCCCAAGGTCATGAAAAACACACGTTGA 732 0.4303 MEALNSSCSKAIIVDLLGTHVPKCAPLVSNTPKFSLSPNDKKGCNFVFPKLVQNKGVFPLHAVPSKTLVDLDSLVLQAQEQPKEPKTIHVTFQLQRNCKFGEQFLVVGNDPLFGSWNPANAIPMTWSEGHVWTVKMGVPAGKFQFKFVLKRREGDIVWQPGPDRIIHTWEAMNRITVYEDWEDVLLQKVTEDGEVPNSKEEDQLAQANMELQIESEMPNFAENLGRPKEKPKSNAPKVMKNTR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1143 243 CDD CBM20 90 181 - -
Ssu3g1143 243 MobiDBLite consensus disorder prediction 215 243 - -
Ssu3g1143 243 Gene3D Immunoglobulins 83 182 IPR013783 -
Ssu3g1143 243 Coils Coil 197 217 - -
Ssu3g1143 243 PANTHER OS01G0856900 PROTEIN 1 235 - -
Ssu3g1143 243 SMART CBM_20_2 87 176 IPR002044 GO:2001070
Ssu3g1143 243 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 82 183 IPR002044 GO:2001070
Ssu3g1143 243 Pfam Starch binding domain 88 173 IPR002044 GO:2001070
Ssu3g1143 243 PANTHER ALPHA-AMYLASE 1 235 - -
Ssu3g1143 243 SUPERFAMILY Starch-binding domain-like 85 179 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1143 Ssu-Chr3 27061110 27062353 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1143 - - gmx:102661369 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1143 3 27061110 27062353 Ssu3g1143 3 27061110 27062353 ECH
Ssu3g1143 3 27061110 27062353 Ssu4g2346 4 57092224 57098055 PCT