Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2344 ATGTTTGTTCATTGGGTGCTTAAACATGCCAAGCTTTCTGTCTTCTCTCTAATCACATTCTCTGCCATAATTTTTCTTATCCATGCAGATagtattatctattataattccCTACACCCTGCAGCTAACTTAGGAGCACCAGAGAAGTTGCAAGTTCACAATCACAGAACAAAAGAAGGAATAAGATCAACACCTGTTCACGTACCTTTACGTTCCATTCAAGAGAAGGATGAAGCTGATAGTCGAAATCAGAATGCTCTAGTTGCCCCATTCAATGTCacagaagaagaaagaatagcATGGTTTCGAGAACAGCTGCACAACTTCAAGATCCTCAAGTCAAACAACTTGACCCAACAATTTCATGCTCGAGTTTTGGGATTTTTCGGCCGAGAGTGTGAGGCTCAGTTTTTCATGACTTGGATTTCACCAGCAAGCTTATTTGGAGGGAGAGAACTGCTGTCTGTGGAAAGCATTTTCAAGAACCATCCTAAGGCATGTCTCATAATTCTATCAAGAACTTTGGACACCAGACATGGCTACAGGATCCTGAAACCACTGCTTGATCGCAGGTTCAAAGTGCAGGCAATGACCCCAGACTTGTCATTTTTGCTCAAGAGGACTCCAGCTGAAGTTTGGTTTCATGAGCTAAGGAAGGGTAGAAAGGACCCTGGTGAGATTCCTTTGTCTCAGAATCTATCTAATCTGATAAGACTTGCAGTTCTCTACAAATATGGTGGTGTCTATATAGACACAGATTTTATAGTTCTAAAACCCTTAACAGGGTTAAGGAATTCTATTGGTGCACAGAGCATGAATTTGGGTTCCAAGCACTGGACCAGATTAAATAATGCAGTTCTGATTTTTGATATGAGACATCCACTTCTGCATAGATTCATCAATGAATTTGCATTGACTTTTGATGGAAACAAATGGGGGCATAATGGTCCCTACCTGGTTTCCAGAGTGATTGAGAGGCTGGGGAAAAGATGTGAtttcaattttacaatattGCAGCCTATGGCCTTTTATCCAGTGGACTGGAACAAGATAAGTGGGCTCTTTACGAAACCAAAAACTCGGGGTGAATCAAGATGGGTAGAAGCCAAACTGCTTCAGCTCAGCGGGAAGACTTATGGGATTCATCTATGGAACAAACGTAGTAGCAGATTGACAATTGAAGAAGGAAGTGTCATAGGAAGACTTGTATCAGATTACTGTGTCATTTGCAACCATAAATATAGTTCTTAG 1251 0.3981 MFVHWVLKHAKLSVFSLITFSAIIFLIHADSIIYYNSLHPAANLGAPEKLQVHNHRTKEGIRSTPVHVPLRSIQEKDEADSRNQNALVAPFNVTEEERIAWFREQLHNFKILKSNNLTQQFHARVLGFFGRECEAQFFMTWISPASLFGGRELLSVESIFKNHPKACLIILSRTLDTRHGYRILKPLLDRRFKVQAMTPDLSFLLKRTPAEVWFHELRKGRKDPGEIPLSQNLSNLIRLAVLYKYGGVYIDTDFIVLKPLTGLRNSIGAQSMNLGSKHWTRLNNAVLIFDMRHPLLHRFINEFALTFDGNKWGHNGPYLVSRVIERLGKRCDFNFTILQPMAFYPVDWNKISGLFTKPKTRGESRWVEAKLLQLSGKTYGIHLWNKRSSRLTIEEGSVIGRLVSDYCVICNHKYSS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2344 416 PANTHER ALPHA 1,4-GLYCOSYLTRANSFERASE FAMILY PROTEIN 5 416 IPR044789 -
Ssu4g2344 416 Pfam Alpha 1,4-glycosyltransferase conserved region 289 412 IPR007652 -
Ssu4g2344 416 Pfam Glycosyltransferase sugar-binding region containing DXD motif 151 271 IPR007577 -
Ssu4g2344 416 PANTHER ALPHA 1,4-GLYCOSYLTRANSFERASE FAMILY PROTEIN 5 416 - -
Ssu4g2344 416 Gene3D - 167 345 - -
Ssu4g2344 416 SUPERFAMILY Nucleotide-diphospho-sugar transferases 99 414 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2344 Ssu-Chr4 57051598 57052848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2344 7 412 Glycosyltransferase AT2G38150 47.445 6.82e-136 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2344 K01988 - gmx:100781975 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2344 4 57051598 57052848 Ssu4g2344 4 57051598 57052848 ECH
Ssu3g1148 3 27227457 27228473 Ssu4g2344 4 57051598 57052848 PCT