Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1148 ATGTTTAATCACCGAGTGCTTAAACGTGCCAAGATATCTTTCTTCTCTCTAATCACATTCTCAGCCATAATTTTTCTCATCCATTGTGATGATCTTATCCATTACGATTCCACACACACCCCTTTACGTTCCATGCAAGAAGAGAATGAAGTTGGTAAAGGAAATCATGGAGTACTAGTTGCTCCACTTAATGCCactgaagaagaaagaatagcTTGGTTTAGAGGGAAGCTTCACGAGTTCAAGATTCTCAAGTCAGATGAATTGAGTAGGCAATTCCATGCTCGGGTTCTGGGATTTTTGAGCCATGAATGCGAGTCTCAATTTTTCATGACTTGGGTGTCCCCTGCAGGCTCATTTGGAGCAAGAGAATTGTTGTCTATAGAGAGTCTTTTCAAGGCGAGTCCCAAGGCATGCTTGGTGATTCTATCAAGGACTTTGGACTCCATTCATGGCTATAGGATCCTGAAGCCACTTCTTGATGGGGGGTTCAGAGTTCAAGCAGTGACCCCAGACTTGTCATTTCTCTTCAAGGGGACTCCGGCTAAAGCATGGTTGAATGAGTTGAGGAAAGGGAAGAAGGACCCTGGTGAGGTTTCTCTGTTTCAGAATCTATCTAACTTGATGAGACTTGCAGTTTTGTACAAATATGGTGGTGTCTACCTAGACACAGATTTTGTAGTCTTGAAACCCTTAACTGGGTTGAGGAATTCTATTGGAGCACAAAGCATGGATTTAGGGAATAAGCAGTGGACTAGACTAAACAATGCAGTTCTGATATTTGACATGAATCATCCACTTCTTCTCAGATTCATTAATGAATTTGTGTTGACTTTTAATGGGAACAGATGGGGGCATAATGGTCCCTACCTGGTTTCCAGAGTGGTTGAGAGACTGGGGAAAAGGCCAGGCTTCAACTTTACAATCTTGCCTCCTATGGCCTTTTATCCAGCAGATTGGATAAAGATTGGTGGTCTCTTTAGGAAGCCCAAAACTAGAGGTTCAGCTAAGTGGTGA 1017 0.4199 MFNHRVLKRAKISFFSLITFSAIIFLIHCDDLIHYDSTHTPLRSMQEENEVGKGNHGVLVAPLNATEEERIAWFRGKLHEFKILKSDELSRQFHARVLGFLSHECESQFFMTWVSPAGSFGARELLSIESLFKASPKACLVILSRTLDSIHGYRILKPLLDGGFRVQAVTPDLSFLFKGTPAKAWLNELRKGKKDPGEVSLFQNLSNLMRLAVLYKYGGVYLDTDFVVLKPLTGLRNSIGAQSMDLGNKQWTRLNNAVLIFDMNHPLLLRFINEFVLTFNGNRWGHNGPYLVSRVVERLGKRPGFNFTILPPMAFYPADWIKIGGLFRKPKTRGSAKW 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1148 338 Pfam Glycosyltransferase sugar-binding region containing DXD motif 122 243 IPR007577 -
Ssu3g1148 338 Gene3D - 120 306 - -
Ssu3g1148 338 SUPERFAMILY Nucleotide-diphospho-sugar transferases 62 326 IPR029044 -
Ssu3g1148 338 PANTHER ALPHA 1,4-GLYCOSYLTRANSFERASE FAMILY PROTEIN 39 338 - -
Ssu3g1148 338 PANTHER ALPHA 1,4-GLYCOSYLTRANSFERASE FAMILY PROTEIN 39 338 IPR044789 -
Ssu3g1148 338 Pfam Alpha 1,4-glycosyltransferase conserved region 261 332 IPR007652 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1148 Ssu-Chr3 27227457 27228473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1148 7 338 Glycosyltransferase AT2G38150 50.992 1.28e-123 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1148 K01988 - gmx:100812965 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1148 3 27227457 27228473 Ssu3g1148 3 27227457 27228473 ECH
Ssu3g1148 3 27227457 27228473 Ssu4g2344 4 57051598 57052848 PCT