Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1162 ATGAAAGCCACTGCCATCGCTATAAATCCCACGCTGTCCCCTCCCTTTTGTTCATCTGCCACTCCCCCACCTTCTtgttcttcatcttcttcacaCCCAGCTAGATTTCAGCTTTTTCACTCGCCAGGAGCAAAACCCATCACTATTTCTTGTAAAAGAGCACGATTGTGCTCTTTGCAGGGGTCAAAGACTGTGAGGGGTAGAAAAAGTTTGGTGCTTGAGGCTGGAAGCGTGACCATGGCAGAGGTTGGTTCTCATGAAGAGGGGGAGAACGAGGGTGCTTTGCTTGGCTCCGAGAATGAGAACAATTCAGGGCCTCGAAGAATTGCTCTCTTTGTTGAGCCTTCTCCCTTCGCATATGTCTCAGGATATAAAAACCGGTTTCAGAACTTTATTAGATGCCTTCGTGAAATGGGAGATGAGGTGATGGTTGTGACAACACATGAAGGAGTGCCCCAGGAATTTTATGGAGCCAAATTGATAGGATCTTGGAGCTTTCCCTGCCCTTGGTATCAGAAGGTACCCCTCTCCTTGGCACTTAGTCCAAGAATAATTTCAGAGGTAGCCCAGTTTAAGCCTGACATAATACATGCATCATCACCAGGCATAATGGTTTTTGGAGCTCTTATCATTGCAAAACTATTGTGTGTTCCTATTGTCATGTCCTATCACACCCATGTGCCTGTGTACATTCCAAGATATACCTTTAGGTGGCTGGTGAAACCCATGTGGTTGATCATAAAATTTCTTCACAGAGCAGCTGATCTGACACTGGTGCCATCTGCTGCCATTGCAAAGGATCTCCAAGCGGCTAGAGTCACAGCAGCTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAAATTCCATCCCCAATACTGCTCCCATGAAATGCGATTAAGACTAAGCAATGGTGAACCTCAGAAACCCTTGATAGTTCATGTTGGATGGCTTGGAGTAGAGAAGAGTTTAGATTTTCTGAAAAGGCTCATGGATAGGCTTCCTGAAGCCCGAATCGCTTTCGTTGGTGATGGGCCGTACAGGGAGGAGCTAGAGAAAATGTTTGAGGGTATGCCTGCAGTATTCACTGGAATGTTAGGAGGGGAAGAGCTGTCCCAAGCATATGCCAGTGGAGATGTATTTGTCATGCCTTCAGAGTCAGAGACACTTGGTCTTGTGGTTTTGGAGGCCATGTCTTCAGGGATACCTGTGGTGGCGGCACGTGCTGGAGGTATTCCTGACATAATCCCTGCAGATCAAGATGGTAAAACTAGCTATCTGTACAATCCAGGAGATCTTGAAGACTGCTTGAGCAAACTAAGGCCCCTTTTGCTCAACAAAGTGTTGAGAGAAACCATGGGAAAAGCTGCGCGTGAGGAGATGGAGAAGTATGATTGGAAGGCAGCCACGAGAAAGATTCGCAATGAGCAATACAATGCTGCTATTTGGTTCTGGCGCAAGAAAAGAGCTCAACTATTGAGACCCTTTCAATGGCTGGCCAAACGCTTTTTCCCATCACCACAAGTCAACTACAGGTGA 1545 0.4595 MKATAIAINPTLSPPFCSSATPPPSCSSSSSHPARFQLFHSPGAKPITISCKRARLCSLQGSKTVRGRKSLVLEAGSVTMAEVGSHEEGENEGALLGSENENNSGPRRIALFVEPSPFAYVSGYKNRFQNFIRCLREMGDEVMVVTTHEGVPQEFYGAKLIGSWSFPCPWYQKVPLSLALSPRIISEVAQFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFRWLVKPMWLIIKFLHRAADLTLVPSAAIAKDLQAARVTAANKIRLWNKGVDSEKFHPQYCSHEMRLRLSNGEPQKPLIVHVGWLGVEKSLDFLKRLMDRLPEARIAFVGDGPYREELEKMFEGMPAVFTGMLGGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVAARAGGIPDIIPADQDGKTSYLYNPGDLEDCLSKLRPLLLNKVLRETMGKAAREEMEKYDWKAATRKIRNEQYNAAIWFWRKKRAQLLRPFQWLAKRFFPSPQVNYR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1162 514 Gene3D Glycogen Phosphorylase B; 304 466 - -
Ssu3g1162 514 Pfam Glycosyltransferase Family 4 126 289 IPR028098 -
Ssu3g1162 514 CDD GT4-like 108 480 - -
Ssu3g1162 514 Gene3D Glycogen Phosphorylase B; 108 303 - -
Ssu3g1162 514 PANTHER SULFOQUINOVOSYL TRANSFERASE SQD2 21 513 - -
Ssu3g1162 514 PANTHER GROUP 1 FAMILY GLYCOSYLTRANSFERASE 21 513 - -
Ssu3g1162 514 Pfam Glycosyl transferases group 1 312 446 - -
Ssu3g1162 514 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 109 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1162 Ssu-Chr3 27641008 27645776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1162 38 429 Glycosyltransferase AT5G01220 72.980 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1162 K06119 - gmx:100807850 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1162 3 27641008 27645776 Ssu3g1162 3 27641008 27645776 ECH
Ssu3g1162 3 27641008 27645776 Ssu4g2326 4 55903122 55907768 PCT