Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1240 ATGGAGAAGGTTAGTCTGGAAGTAAAACCAGATGAGGCTGATGAGATGAAATGGGTTCATGATTCTTCAGTGGACCACAAAGGCAGGGTTCCACTCCGAGCTTCAACTGGTTCTTGGAAAGCTGCTCTCTTCATTATTGCAATTGAGACCAGCGAGAGGTTGAGCTTCTTTGGAATAGCAACCAGTTTGGTCATTTACTTCACAAAGGTTATGCATCAAGAACTCAAAACTGCAGCAAGAAATGTGAACTACTGGTCTGGTGTCACAACTTTGATGCCACTGTTTGGTGGATTCATAGCCGATGCATACTTGGGCCGTTACTCCACCGTGCTGGCATCAAGCATTGTTTATCTCATGgGTTTGGTTCTCCTTACTCTGTCTTGGTTCTTACCAGGCTTAAAGCCATGTGATGACACAAACATTTGCACTGAACCAAGGAGAATTCATGAAGTGGTTTTCTTCCTGGCCATTTACTTAATATCTTTTGGAACTGGAGGGCACAAACCCTCCTTGGAGAGCTTTGGAGCTGACCAATTTGATGAGGATCATGATGAAGAAAGGAGGCAAAAAATGTCCTTTTTCAATTGGTGGAATTGTGCACTGTGCAGTGGACTTATTCTGGGAGTGACCCTCATTGTTTACATACAAGACAACATAAACTGGGGAGCTGCTGATATTATCTTCACAGTGGTCATGGCTTTTTCACTGCTCGTCTTCATAACTGGAAGACCATTTTATCGTTATAGGGTACCCACCGGGAGTCCCTTGACTCCAATGTTGCAGGTTCTTGTTGCTGCCATTTCCAAAAGAAAGCTTCCATATCCTTCTAATCCTGCTCAATTGTATGAGGTTCCTAAGTTTCACGGCAACAATAAAAGATTTCTGTGTCACACTGACAAACTCAAATTTCTTGACAAGGCAGCGATTCTTGTTAATGATGGAAGTTCAGCAGAGAAGCAGAGTCCCTGGAACCTAGCAACTGTAACTAAGGTTGAAGAAATGAAGCTTATAATCAACATAATCCCCATTTGGGTATCTACCATACCATTCGGCGTATGTGTGGCACAAACATCTACATTCTTCATCAAACAAGGTAGCACAATGAACAGAAAGATAGGTAATGGGTTTGAGATTCCTCCAGCTTCAATATTCACCGTTGCTGCATTGGGGATGACAGTTTCTGTGGCCATATATGACAAGATTCTTGTACCCGTGTTACGAAGGCTAACTCAAAACGAGAGAGGAATCAACATTCTTCAGAGGATTGGTTTTGGAATGCTCTTCTCTGTTAGCACAATGATAGTAGCAGCTTTGGTGGAGAAAAAGAGGCTTGAAGCTGTTGAGAGGGATCCCTTGAAGGGTTCACTAACAATGAGTGTCTTCTGGTTGGTTCCACAGTTTCTTATTATTGGTTTTGGTGATGGGTTTACTCTGGTGGGTTTGCAAGAGTACTTTTACGACCAAGTTCCTGACTCCATGAGAAGCCTAGGCATAGCATTTTACCTTAGCGTAATTGGGGCAGCGAGTTTCCTAAGTAGTATGCTCATAACAATTGTTGATCACATGACAAAGAAGAGTGGGAGGAGTTGGTTTGGTAAGGATTTGAATAGTAGTCGCTTGGACAAATTCTATTGGCTATTGGCAGCAATAACCACAGTGAATTTGTTCTTGTTTGTGTTTGTTGCCCGTCGATATTCCTACAAAAATGTGCAAAAGGTAGTAGTGGCTGATTGCTATGAAGGCAAAAGTGATTGTGAGGGTGTAGAAAACAAGGTTTAg 1779 0.4233 MEKVSLEVKPDEADEMKWVHDSSVDHKGRVPLRASTGSWKAALFIIAIETSERLSFFGIATSLVIYFTKVMHQELKTAARNVNYWSGVTTLMPLFGGFIADAYLGRYSTVLASSIVYLMGLVLLTLSWFLPGLKPCDDTNICTEPRRIHEVVFFLAIYLISFGTGGHKPSLESFGADQFDEDHDEERRQKMSFFNWWNCALCSGLILGVTLIVYIQDNINWGAADIIFTVVMAFSLLVFITGRPFYRYRVPTGSPLTPMLQVLVAAISKRKLPYPSNPAQLYEVPKFHGNNKRFLCHTDKLKFLDKAAILVNDGSSAEKQSPWNLATVTKVEEMKLIINIIPIWVSTIPFGVCVAQTSTFFIKQGSTMNRKIGNGFEIPPASIFTVAALGMTVSVAIYDKILVPVLRRLTQNERGINILQRIGFGMLFSVSTMIVAALVEKKRLEAVERDPLKGSLTMSVFWLVPQFLIIGFGDGFTLVGLQEYFYDQVPDSMRSLGIAFYLSVIGAASFLSSMLITIVDHMTKKSGRSWFGKDLNSSRLDKFYWLLAAITTVNLFLFVFVARRYSYKNVQKVVVADCYEGKSDCEGVENKV 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1240 592 CDD MFS_NPF5 39 567 IPR044739 GO:0042937|GO:0042938|GO:0071916
Ssu3g1240 592 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 96 120 IPR018456 GO:0006857|GO:0016020|GO:0022857
Ssu3g1240 592 Pfam POT family 107 525 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu3g1240 592 Gene3D MFS general substrate transporter like domains 10 574 IPR036259 -
Ssu3g1240 592 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 21 577 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu3g1240 592 PANTHER PROTEIN NRT1/ PTR FAMILY 5.6 21 577 - -
Ssu3g1240 592 SUPERFAMILY MFS general substrate transporter 33 568 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1240 Ssu-Chr3 30255987 30262719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1240 1 590 Organic Solute Cotransporters AT3G53960 61.204 0.0 779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1240 - - gmx:100801757 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1240 3 30255987 30262719 Ssu3g1240 3 30255987 30262719 ECH
Ssu3g1240 3 30255987 30262719 Ssu4g2223 4 52273461 52279406 PCT