Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1293 ATGGAGTACGAGGACCGCTTCAGACACAACCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTAGATGATACTTTGTATCCACTAAGCAGTGGTATCGCAAAAGCATGTGGCCAAAATATTAAAGACTATATGGTGGAAAAGCTTGGCATAGAGAGAAGCAAAATTGTGGAGTTGTCCAACCTCCTTTATAAGAACTATGGAACAACTATGGCTGGTTTAAGGGCAATCGGATATGATTTTGACTATGATGAATATCACAgTTTTGTTCATGGGAGATTACCTTACGAGAACTTGAAACCAGACCCAGTTCTGAGGAACCTCTTGCTGAGCCTGCCCTATAGGAAACTGATCTTCACAAACTCAGACAGGGTCCATGCAGTTAAGGCACTTAGCAGGCTTGGATTAGAAGACTGCTTTGAAGGAATCATATGCTTTGAGACCCTTAATCCCTTCCACAAAAGCAGTGtctctgatgatgaagatgacatTGAATTTGTGGGGGGTTCAGgcacaaccaatccaaccacTAAAAAAGATGCTAGTAGCTTTCCAATCTTTGACATCATTGGCCATTTTGCTCAACCCAATCCCAACACAGTTTTGCCCAAGACACCAATTATTTGCAAACCATCAGAAAATGCCATTGAGTTGGCTCTCAAGATAGCCAACCTTAACCCACAAAGAACTTTGTTCTTTGAGGATAGTGTCCGCAACATACAAGCTGGAAAACGTGTGGGTCTTCACAGTGTGCTGGTTGGAACATCCCAGAGAATTAAAGGAGCAGATTATGCATTGGAAAGCATCCACAACCTTAGGGAGGCAGTGCCCGAACTATGGGAAGATGGCATAAAATCAGAAGTTGCTTATCCTGGCAAGCTTGCTGTGGAGACGTCTGTGTCTGCTTAG 909 0.4081 MEYEDRFRHNQRPKYDCLLFDLDDTLYPLSSGIAKACGQNIKDYMVEKLGIERSKIVELSNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRNLLLSLPYRKLIFTNSDRVHAVKALSRLGLEDCFEGIICFETLNPFHKSSVSDDEDDIEFVGGSGTTNPTTKKDASSFPIFDIIGHFAQPNPNTVLPKTPIICKPSENAIELALKIANLNPQRTLFFEDSVRNIQAGKRVGLHSVLVGTSQRIKGADYALESIHNLREAVPELWEDGIKSEVAYPGKLAVETSVSA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1293 302 Pfam Haloacid dehalogenase-like hydrolase 210 253 IPR041492 -
Ssu3g1293 302 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 16 253 IPR010237 -
Ssu3g1293 302 SUPERFAMILY HAD-like 13 279 IPR036412 -
Ssu3g1293 302 SFLD C1.5.3: 5'-Nucleotidase Like 10 281 IPR010237 -
Ssu3g1293 302 Gene3D - 103 286 IPR023214 -
Ssu3g1293 302 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 208 253 IPR006439 -
Ssu3g1293 302 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 10 281 - -
Ssu3g1293 302 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 1 302 - -
Ssu3g1293 302 Gene3D - 10 99 - -
Ssu3g1293 302 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 1 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1293 Ssu-Chr3 31845218 31846991 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1293 K07025 - gmx:100795391 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1293 3 31845218 31846991 Ssu3g1293 3 31845218 31846991 ECH
Ssu3g1293 3 31845218 31846991 Ssu4g2169 4 49748956 49753496 PCT