Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1950 atggggTGCAAGAACACAATTTTCTTGGCATTGGTTGTTGTTTTGATCACAAAAGAGGCCTTGGCAGAACAACATGTAGTTGGTGGAAGCCAAGCTTGGGATGAATCCACAGACTTCAACTCTTGGGTTTCAGGCCAAACATTTAAGGTTGGCGATCAACTTGTTTTCAAGTACTCTTCTGGGCTGCATAGTGTGGTTGAGCTAGGTAGCGAGAGTGAGTACAAGAATTGTGATCTTGGCAGTGCAGTGAACTCAATGAGCAGTGGCAATGATGTTGTAAAACTGAACAAGCCTGGTACACGTTACTTTGCATGTGGTACCTTGGGCCATTGTGGTCAAGGCATGAAGGTGAAGATTACAACAGTGTCTGGGACCTCTTCCCCTCcatcctcatcttcttcttcttcttctcctactTCATCTTCAGCTTCACAAGGCTTCATCTCTCTTGTGGTCATTGTTGCATTGCTGATTGCCTCTCTTGTTATCCAGTTTTGA 498 0.4137 MGCKNTIFLALVVVLITKEALAEQHVVGGSQAWDESTDFNSWVSGQTFKVGDQLVFKYSSGLHSVVELGSESEYKNCDLGSAVNSMSSGNDVVKLNKPGTRYFACGTLGHCGQGMKVKITTVSGTSSPPSSSSSSSSPTSSSASQGFISLVVIVALLIASLVIQF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1950 165 Gene3D - 21 127 IPR008972 -
Ssu4g1950 165 ProSiteProfiles Phytocyanin domain profile. 23 123 IPR003245 GO:0009055
Ssu4g1950 165 CDD Phytocyanin 24 120 - -
Ssu4g1950 165 Pfam Plastocyanin-like domain 34 115 IPR003245 GO:0009055
Ssu4g1950 165 MobiDBLite consensus disorder prediction 122 142 - -
Ssu4g1950 165 PANTHER BNAA06G32330D PROTEIN 7 136 - -
Ssu4g1950 165 SUPERFAMILY Cupredoxins 22 121 IPR008972 -
Ssu4g1950 165 PANTHER BLUE COPPER PROTEIN 7 136 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1950 Ssu-Chr4 37028104 37028888 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1950 10 122 Miscellaneous Gene Families AT3G27200 66.387 1.40e-54 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1950 - - gmx:100305865 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1950 4 37028104 37028888 Ssu4g1950 4 37028104 37028888 ECH
Ssu9g0445 9 22523617 22524451 Ssu4g1950 4 37028104 37028888 PCT