Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1949 ATGGCTCTTCTAGGCTTAACGAGTTTTGCTGCTTGGACCCTTCTCTTGGTCCTAGCAACTGTGCCTCATCAAGCACACGCTTCAAGCCCTGGCTCCTTAGGCAGAATCATCAACCCTCCAGTGTATGGAATATGTGCCTCTTCTGTCATTGTGCATGGATACAAGTGTCAAGAACACGAGGTTACAACCAGTGATGGGTACATCCTGAGCCTGCAAAGGATCCCAGAAGGTCGAGGTGAAGGTGGTGGCAGTGGGACTAGGAAGCAGCCAGTGATCATACAGCACGGAGTTCTAGTGGATGGTATGACATGGCTTCTGAACCCTCCAGAGCAAGACCTACCCTTGATTTTAGCAGATAATGGCTTTGATGTGTGGATAGCTAACACCAGAGGAACCAGATATAGCCGCCGACACATCTCATTGGACCCCTCTAGTCCGGCTTTTTGGAATTGGTCTTGGGATGAACTTGTTTCCTATGATCTACCTGCCGTGTTTGATTATGTATTCAGCCAAACGGGGCAGAAGATCAATTACGTTGGCCATTCCCTGGGAACTTTGATAGCTTTGGCTTCCTTCTCGGAAGGGAAATTGGTTAACCAGCTGGAATCAGCAGCCTTGTTGAGCCCTATAGCCTATTTAAGCCACATGAACACCGAACTTGGTGTTGTTGCAGCTAAGTCCTTTGTTGGTGAGCTCACTACCCTCTTTGGTCTGGCAGAATTTAATCCAAAAGGGTTACCAGTTGATGCCTTTCTCAAGTCTCTCTGCGCTTACCCTGGGATTGACTGCTATGACTTGTTGACTGCACTAACTGGTAAAAATTGCTGCCTCAATTCTTCAACTGTTGATCTATTCTTGGTGAATGAACCTCAGTCAACATCAACAAAGAACATGGTGCACTTGGCTCAGACTGTTAGACGTGGGGTgttgacaaaatttaattacGTGAGACCAGACCATAATATTATGCATTATGGAGAAATATTCCCTCCAATCTATAACCTTTCCAATATCCCCCATGACCTCCCTCTCTTTATTAGCTATGGTGGCCGAGATGCACTTTCAGATGTTCGTGACGTTGAGAAATTACTTGACATACTCAAGTTCCATGATGAGGAAAAGCGCAGTGTCCAGTTCATCGAGGAGTATGCTCATGCTGACTACATTATGGGGTTCAATGCCAAGGACTTAGTGTATAATGCTGtcctttcatttttcaatcGTCACAATTGA 1233 0.4485 MALLGLTSFAAWTLLLVLATVPHQAHASSPGSLGRIINPPVYGICASSVIVHGYKCQEHEVTTSDGYILSLQRIPEGRGEGGGSGTRKQPVIIQHGVLVDGMTWLLNPPEQDLPLILADNGFDVWIANTRGTRYSRRHISLDPSSPAFWNWSWDELVSYDLPAVFDYVFSQTGQKINYVGHSLGTLIALASFSEGKLVNQLESAALLSPIAYLSHMNTELGVVAAKSFVGELTTLFGLAEFNPKGLPVDAFLKSLCAYPGIDCYDLLTALTGKNCCLNSSTVDLFLVNEPQSTSTKNMVHLAQTVRRGVLTKFNYVRPDHNIMHYGEIFPPIYNLSNIPHDLPLFISYGGRDALSDVRDVEKLLDILKFHDEEKRSVQFIEEYAHADYIMGFNAKDLVYNAVLSFFNRHN 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1949 410 Pfam Partial alpha/beta-hydrolase lipase region 51 107 IPR006693 GO:0006629
Ssu4g1949 410 PANTHER TRIACYLGLYCEROL LIPASE 2 11 410 - -
Ssu4g1949 410 PIRSF Steryl_ester_lip 6 410 IPR025483 GO:0016788
Ssu4g1949 410 SUPERFAMILY alpha/beta-Hydrolases 52 407 IPR029058 -
Ssu4g1949 410 PANTHER LYSOSOMAL ACID LIPASE-RELATED 11 410 - -
Ssu4g1949 410 Gene3D alpha/beta hydrolase 38 408 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1949 Ssu-Chr4 37018269 37025077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1949 40 407 Acyl Lipid Metabolism Gene Families AT2G15230 39.084 7.22e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1949 K01052 - gmx:100779460 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1949 4 37018269 37025077 Ssu9g0446 9 22532370 22540079 PCT