Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1840 ATGTTGAGGGTTGCAGCTAAGAGACTTTCCTCTCTCTCCGCGTCTCCGTGGAGGGCCAACCACGCCGCCTCCGCCTTTCTCTCTCGGAGTCCCATCGCACCGCCCTCTTCCTCCGAGGAGCGCAGATCCGACCCGTTCTCGCTCCGACCCGAATTCTTTCTTCCCTTCAGAGGTTTTGCTACTGAAACTCTGAtccacacaaaagaaaacagcATTATTCCTGAAATTCCTGCAACTGTTGTTGCTGTTAAAAACCCTTCTTCTAAGATTGTATATGATGAACACAACCATGAAAGATTTCCTCCTGGTGACCCAAGCAAAAGGGCTTTTGCCTACTTTGTTCTGACAGGTGGTAGGTTTGCTTATGCCTCTCTGGTCCGTCTCCTTATCCTCAAGTTTGTGCTCAGTATGTCAGCAAGTAAGGATGTTCTTGCTATGGCTTCACTTGAAGTTGATCTCTCCAGCATTGAGCCAGGCACTACTGTGACTGTTAAGTGGCGTGGAAAGCCTGTATTCATCAGGCGTAGAACAGAAGATGATATTAAGCTGGCAAACAGTGTTGATGTTGGATCTCTTCGTGATCCCCAGCCGGATGCAGATAGAGTCAAAGACCCAGAATGGCTCATTGTGATTGGGGTTTGCACCCATCTGGGTTGCATTCCCTTGCCAAATGCTGGCGACTTCGGTGGATGGTTTTGCCCATGCCATGGTTCACATTATGATATTTCTGGCAGAATTAGGAAGGGACCAGCACCATACAATCTGGAGGTACCAACTTATACCTTCTTGGATGAAAACAAGTTGATGATTGGTTGA 816 0.4694 MLRVAAKRLSSLSASPWRANHAASAFLSRSPIAPPSSSEERRSDPFSLRPEFFLPFRGFATETLIHTKENSIIPEIPATVVAVKNPSSKIVYDEHNHERFPPGDPSKRAFAYFVLTGGRFAYASLVRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVGSLRDPQPDADRVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLMIG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1840 271 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 271 IPR014349 GO:0051537
Ssu4g1840 271 Pfam Rieske [2Fe-2S] domain 154 257 IPR017941 GO:0051537
Ssu4g1840 271 SUPERFAMILY ISP domain 133 268 IPR036922 GO:0051537
Ssu4g1840 271 Gene3D - 140 271 IPR036922 GO:0051537
Ssu4g1840 271 Pfam Ubiquinol cytochrome reductase transmembrane region 102 142 IPR004192 GO:0008121
Ssu4g1840 271 PRINTS Rieske 2Fe-2S subunit signature 209 220 IPR005805 GO:0016020|GO:0051537
Ssu4g1840 271 PRINTS Rieske 2Fe-2S subunit signature 243 255 IPR005805 GO:0016020|GO:0051537
Ssu4g1840 271 PRINTS Rieske 2Fe-2S subunit signature 231 243 IPR005805 GO:0016020|GO:0051537
Ssu4g1840 271 CDD Rieske_cytochrome_bc1 148 271 - -
Ssu4g1840 271 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 181 269 IPR017941 GO:0051537
Ssu4g1840 271 SUPERFAMILY ISP transmembrane anchor 88 144 - -
Ssu4g1840 271 TIGRFAM Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 126 271 IPR006317 GO:0008121
Ssu4g1840 271 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1840 Ssu-Chr4 33540674 33542963 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1840 K00411 - gmx:100806917 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1840 4 33540674 33542963 Ssu4g1840 4 33540674 33542963 ECH
Ssu4g1840 4 33540674 33542963 Ssu9g0303 9 15231027 15233259 PCT