Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1827 ATGCAAGAGCTTTTAGATGCTCCTTTTGTGTTCAGGATTGAGAGAAAGCATAACCGGGAACCCATGTCATCTGTGCCAGCACGAACAGGGCGACAAAGACAGCGTTATGAAGACAATTTGCGCCTTGTCTCTGGATGTATTCCCTATAGATGGAGAAAGGACAACACAGATCAAATGGGAGAAACTAAAGACATAATAGAAGTACTTATGGTTTCTTCACCAAAACGTGATGACCTTGTGTTCCCAAAGGGTGGATGGGAGGATGATGAGACTGTTACAGAAGCTGCTTGCCGTGAAGCTTTAGAGGAAGCAGGTGTTAAAGGAAAACTAAGAGAAATTCCATTAGGAATATGGGAGTTCAGAAGCAAAAGCAGTCAAGACTTATGTAACATGGAAGGAGGGTGCAGAGGATACATGTTTGCCTTGGAGGTGACTGAAGAACTTGAGACGTGGCCAGAGCAGAAAAACCGCGCTCGCCAATGGTTAAACATAAAAGAGGCATTCAGACTCAGCCGATATGACTGGATGAGTGATGCACTCGAGGTGTTTTTGAGAGTCATGGCAGAGGACAGAAAACTTGAGAAGCAAGACCAGAATGTCGAACCCCCTTCAATTGTAGTAGCAGATGTGACAGAATGCCAAAGTATGTCACCCAACTGCTATAAAAGATCCTCTCCCATGCAGCACCATGGTATGACTCCTAAAGCCAATCTTCTGTCATGTGCTACTCAAGAGATAGCCATCCACTTTGGTTATTGA 759 0.4453 MQELLDAPFVFRIERKHNREPMSSVPARTGRQRQRYEDNLRLVSGCIPYRWRKDNTDQMGETKDIIEVLMVSSPKRDDLVFPKGGWEDDETVTEAACREALEEAGVKGKLREIPLGIWEFRSKSSQDLCNMEGGCRGYMFALEVTEELETWPEQKNRARQWLNIKEAFRLSRYDWMSDALEVFLRVMAEDRKLEKQDQNVEPPSIVVADVTECQSMSPNCYKRSSPMQHHGMTPKANLLSCATQEIAIHFGY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1827 252 SUPERFAMILY Nudix 32 195 IPR015797 -
Ssu4g1827 252 ProSitePatterns Nudix box signature. 84 105 IPR020084 GO:0016787
Ssu4g1827 252 PANTHER NUDIX HYDROLASE 12, MITOCHONDRIAL 22 212 - -
Ssu4g1827 252 Pfam NUDIX domain 68 179 IPR000086 -
Ssu4g1827 252 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 22 212 - -
Ssu4g1827 252 CDD Nudix_Hydrolase_9 42 176 - -
Ssu4g1827 252 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 26 185 - -
Ssu4g1827 252 ProSiteProfiles Nudix hydrolase domain profile. 39 184 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1827 Ssu-Chr4 33226865 33231296 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1827 K07766 - gmx:100794003 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1827 4 33226865 33231296 Ssu4g1827 4 33226865 33231296 ECH
Ssu4g1827 4 33226865 33231296 Ssu9g0292 9 14977711 14981101 PCT