Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1819 ATGGAGGTACATTCTCCTGTTGTAGCCAAGAGATTATGGAATGTGGTGAGGGTAACCTTCTTCATGATAAGGAAGGGTCTCATATCAAAGAGGAAGATGATCATGGACATGAATTTGATGATGAAGAAAGGGAAAGTGGTCAGAAAATCACTTAGCAATTTCATGTCGTcccatcatcatcaccaccaccaccacaagaACCCAAAGAGTACTGTGACACGTGGCGGCTTCGGGGAGCATTACGAATTCTCTTGCAGCAATAGTCCAAATCCTGTTTTTTTCCACATGCCAAAGCGCAAGCACCATTTCAACTTCCCCTGCATCCACGCCCCCGAGGTTCTTGAAGAGGAGCCCCATTTTTCATTCGAAGTTGAAAGTGATGTGCCCAAGGCTGTGGTTACGGTGCCCAAGACCCCAGAATACacgttcaatttttttggtaccGGAGAGAAAAAGAGCCCTCTTCTCTCACCGTTCTCCGTGAGGGTGTCCAATTACTCGGCATTGGATGAAAATGAAGAGGTTGGGAATGATCATGTTGATGATCAGGCTGAGGATTTCATCAGAAGGTTCTATGAACAGCTTAGGACGCAAAGCCCCGTGCAATTCCTACGTTACCAAAACGTGTAA 630 0.4238 MEVHSPVVAKRLWNVVRVTFFMIRKGLISKRKMIMDMNLMMKKGKVVRKSLSNFMSSHHHHHHHHKNPKSTVTRGGFGEHYEFSCSNSPNPVFFHMPKRKHHFNFPCIHAPEVLEEEPHFSFEVESDVPKAVVTVPKTPEYTFNFFGTGEKKSPLLSPFSVRVSNYSALDENEEVGNDHVDDQAEDFIRRFYEQLRTQSPVQFLRYQNV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1819 209 PANTHER OS01G0930500 PROTEIN 1 208 - -
Ssu4g1819 209 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 1 208 - -
Ssu4g1819 209 Pfam Cotton fibre expressed protein 178 208 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1819 Ssu-Chr4 33086978 33087607 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1819 - - gmx:100806803 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1819 4 33086978 33087607 Ssu4g1819 4 33086978 33087607 ECH
Ssu4g1819 4 33086978 33087607 Ssu9g0286 9 14680673 14681272 PCT