Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1493 ATGTCTAGTGCTACGAAAGTGTTGGATCCAGCATTCCAGGGAGTTGGTCAAAAAGTAGGGACTGAAATATGGAGGATTGAGAATTTTCAGCCAGTTCCATTGCCCAGATCTGAATATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAGACAGCACAAGGCAAAGGAGGtgcttatttttatgatattcacTTCTGGATTGGAAAGGATACAAGTCAGGATGAGGCTGGAACAGCAGCCATTAAAACTGTTGAACTCGATGCGTCTCTTGGAGGACGTGCAGTGCAACACAGGGAAATTCAAGGGCATGAATCTGACAAGTTTTTGTCATACTTTAAGCCATGTATAATACCATTAGAGGGGGGAGTTGCATCTGGATTTAGAAAACCTGAAGAAGAGGAGTTTGAAACACGTTTATATGTATGCAGAGGAAAACGAGTTGTCAGAATAAAACAGGTCCCTTTTGCACGGTCTTCGCTGAATCATGATGATGTATTCATCCTAGACACTCAGAATAAGATTTATCAATTCAATGGTGCAAACTCCAATATTCAGGAAAGAGCCAAGGCTCTTGAAGTTATTCAGTTGTTGAAGGAAAAATATCATGAAGGCAAATGCGACGTTGCAATTGTTGATGATGGCAAGCTTGATACTGAGTCAGACTCAGGTGAATTTTGGGTTCTCTTTGGGGGTTTTGCTCCCATTGGGAAGAAGGTAATTGGTGACGATGATATTGTTCCAGAGACCACTCCTGCTCAACTCTATAGTATTGCTGATGGTGAGGTCAAGCCTGTTGAAGGTGAACTTTCAAAATCACTGCTGGAGAACAGCAAATGCTATTTATTGGACTGTGGTGCTGAGGTATTTGTCTGGGTTGGCCGGGTAACACAAGTTGAAGAACGAAAAGCAGCTTGTCAAGAAGCTGAGGAGTTTATCACAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATTATTCAAGGTTATGAGGCACATTCATTTAAGTCCAACTTTGATTCTTGGCCATCAGGATCTGCTACTACCAGTGCTGAGGACGGAAGAGGAAAAGTTGCAGCTTTGTTGAAGCAGCAAGGTATGGGTGTAAAAGGGGTGACAAAAAGTACCCCAGTTATTGAGGAAATTCCACCTTTGCTTGAAGGAGGTGGAAAGATGGagGTATGGCAAATCAATGGAAGTGCTAAGACTCCATTACCTAAGGAGGATATTGGTAAATTTTATAGTGGAGATTGTTACATAGTACTGTACACTTATCACTCTAGCGAGAGGAAGGAAGACTACTACTTGTGCTGTTGGTTTGGAAAAGACAGCATTGAGGAGGAACAAAGGATGGCTATTCGATTGGCTAACACAATGTTCAACTCATTAAAGGGTAGACCTGTTCAGGGTCGCATATTTGACGGTAAAGAGCCACCACAGTTTATTGCTCTTTTCCATCCAATGGTAGTCCTCAAGGGAGGCTTAAGCTCtggttacaaaaaatttatagcaAACAAAGGTTTGCCAGATGAGACATACACAGCAGAGAGTATTGCACTTATTCGAATTTCTGGAACATccattcataataataaagtgGTGCAAGTAGATGCAGTGGGGGCATCGTTGAATTCTACCGAGTGTTTTGTCCTGCAATCTGGCTCAGCTGTTTTTACATGGCATGGGAATCAATGTTCCCTTGAGCAGCAGCAGCTTGCAGCcaaagttgctgaatttttaaGGCCAGGAGTTGCTTTAAAGCTTGCTAAAGAAGGATACAGAAACCTCGGCTTTCTGGTAGAGGAGGTTTACAACTTTTCCCAAGATGATTTGTTAACTGAGGATATTCTCATCCTTGACACACACGCAGAAGTGTTTGTTTGGATTGGTCAGTCTGTGGAcccaaaagaaaagcaaaatgcTTTTGAAATTGCCCAGAAATACATAGATAAGGCTGCATCTTTGGAAGGACTATCTCCTCATGTACCACTGTATAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTACGGTTCCAGGGAACTCATTCCAGAAAAAGGTGACATTACTCTTTGGGATTGGCCATCCTGTAGAGGAAAAGTCTAATGGCTCAAGTCAAGGGGGACCGAGACAAAGAGCAGAAGCTTTGGCTGCCTTAAATAATGCATTCAATTCATCTCCTGAGTCAACATCCAGTGTGGACAAGTTAAATGGGTTAAATCAAGGAGGACCAAGACAAAGGGCTGAAGCCTTAGCAGCCTTAAACTCTGCATTTAATTCATCATCTGGAACCAAAATTTATACCCCTAGGCCAACTGGAAGAAGTCAAGGATCACAAAGAGCAGCAGCAGTAGCTGCTCTTTCTTCAGTTCTTACTGCTGAAAAGAAGAAACCTTCACCTGAAACTTCTCCTGTGGCAAGCACTAGTCCTGTAGTGGAAAGTAGCAACTTTGTTACTAAAAGTGAAAGCGCCCCTTCTGAAACGGAAGGTGTTGAAGAAGCTGCAGAAGCCAAGGAGACGGAAGAACTTCCCCCTGAAACTGGTACCAATGGGGATTCAgaaccaaaacaagaaaatgtgGAGGATCGAAATGACAGTGAAAATAGTCAAAATGTCTTCAGTTATGAGCAATTAAAGACTAAATCTGGTAGGGTTGTGTCTGGAATTGATCTTAAACGGAGAGAGGCCTATCTGTCAGACAAAGAGTTCGAAACTGTATTTGGAATGACCAAAGAAGCATTCTCTAAGTTGCCAAGATGGAAGCAAGACATGCTGAAAAGGAAAGTGGATTTGTTCTAG 2838 0.4073 MSSATKVLDPAFQGVGQKVGTEIWRIENFQPVPLPRSEYGKFYMGDSYIILQTAQGKGGAYFYDIHFWIGKDTSQDEAGTAAIKTVELDASLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGVASGFRKPEEEEFETRLYVCRGKRVVRIKQVPFARSSLNHDDVFILDTQNKIYQFNGANSNIQERAKALEVIQLLKEKYHEGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVIGDDDIVPETTPAQLYSIADGEVKPVEGELSKSLLENSKCYLLDCGAEVFVWVGRVTQVEERKAACQEAEEFITSQKRPKSTRITRIIQGYEAHSFKSNFDSWPSGSATTSAEDGRGKVAALLKQQGMGVKGVTKSTPVIEEIPPLLEGGGKMEVWQINGSAKTPLPKEDIGKFYSGDCYIVLYTYHSSERKEDYYLCCWFGKDSIEEEQRMAIRLANTMFNSLKGRPVQGRIFDGKEPPQFIALFHPMVVLKGGLSSGYKKFIANKGLPDETYTAESIALIRISGTSIHNNKVVQVDAVGASLNSTECFVLQSGSAVFTWHGNQCSLEQQQLAAKVAEFLRPGVALKLAKEGYRNLGFLVEEVYNFSQDDLLTEDILILDTHAEVFVWIGQSVDPKEKQNAFEIAQKYIDKAASLEGLSPHVPLYKVTEGNEPCFFTTYFSWDHAKATVPGNSFQKKVTLLFGIGHPVEEKSNGSSQGGPRQRAEALAALNNAFNSSPESTSSVDKLNGLNQGGPRQRAEALAALNSAFNSSSGTKIYTPRPTGRSQGSQRAAAVAALSSVLTAEKKKPSPETSPVASTSPVVESSNFVTKSESAPSETEGVEEAAEAKETEELPPETGTNGDSEPKQENVEDRNDSENSQNVFSYEQLKTKSGRVVSGIDLKRREAYLSDKEFETVFGMTKEAFSKLPRWKQDMLKRKVDLF 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1493 945 SUPERFAMILY VHP, Villin headpiece domain 878 945 IPR036886 GO:0003779|GO:0007010
Ssu4g1493 945 PANTHER VILLIN-3-LIKE ISOFORM X1 1 596 - -
Ssu4g1493 945 MobiDBLite consensus disorder prediction 736 752 - -
Ssu4g1493 945 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Ssu4g1493 945 PRINTS Gelsolin family signature 437 455 IPR007122 GO:0051015
Ssu4g1493 945 PRINTS Gelsolin family signature 610 632 IPR007122 GO:0051015
Ssu4g1493 945 PRINTS Gelsolin family signature 470 490 IPR007122 GO:0051015
Ssu4g1493 945 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Ssu4g1493 945 PRINTS Gelsolin family signature 639 658 IPR007122 GO:0051015
Ssu4g1493 945 PANTHER VILLIN-3-LIKE ISOFORM X1 600 945 - -
Ssu4g1493 945 SUPERFAMILY Actin depolymerizing proteins 9 148 - -
Ssu4g1493 945 MobiDBLite consensus disorder prediction 844 858 - -
Ssu4g1493 945 PANTHER VILLIN 1 596 IPR007122 GO:0051015
Ssu4g1493 945 Gene3D Severin 133 245 IPR029006 -
Ssu4g1493 945 PANTHER VILLIN 600 945 IPR007122 GO:0051015
Ssu4g1493 945 Gene3D Severin 518 596 IPR029006 -
Ssu4g1493 945 MobiDBLite consensus disorder prediction 773 798 - -
Ssu4g1493 945 MobiDBLite consensus disorder prediction 814 838 - -
Ssu4g1493 945 CDD gelsolin_S4_like 386 487 - -
Ssu4g1493 945 ProSiteProfiles Headpiece (HP) domain profile. 880 945 IPR003128 GO:0003779|GO:0007010
Ssu4g1493 945 SMART VHP_1 910 945 IPR003128 GO:0003779|GO:0007010
Ssu4g1493 945 Pfam Gelsolin repeat 405 484 IPR007123 -
Ssu4g1493 945 Pfam Gelsolin repeat 29 111 IPR007123 -
Ssu4g1493 945 Pfam Gelsolin repeat 603 678 IPR007123 -
Ssu4g1493 945 Pfam Gelsolin repeat 532 583 IPR007123 -
Ssu4g1493 945 Pfam Gelsolin repeat 264 337 IPR007123 -
Ssu4g1493 945 Pfam Gelsolin repeat 150 217 IPR007123 -
Ssu4g1493 945 SUPERFAMILY Actin depolymerizing proteins 510 599 - -
Ssu4g1493 945 Gene3D Severin 597 696 IPR029006 -
Ssu4g1493 945 SUPERFAMILY Actin depolymerizing proteins 129 237 - -
Ssu4g1493 945 CDD gelsolin_S5_like 519 594 - -
Ssu4g1493 945 Gene3D Severin 5 132 IPR029006 -
Ssu4g1493 945 SUPERFAMILY Actin depolymerizing proteins 223 345 - -
Ssu4g1493 945 CDD gelsolin_S6_like 600 685 - -
Ssu4g1493 945 CDD gelsolin_S3_like 254 343 - -
Ssu4g1493 945 Gene3D Severin 389 517 IPR029006 -
Ssu4g1493 945 Gene3D Severin 246 357 IPR029006 -
Ssu4g1493 945 SUPERFAMILY Actin depolymerizing proteins 382 528 - -
Ssu4g1493 945 Gene3D Villin headpiece domain 868 945 IPR036886 GO:0003779|GO:0007010
Ssu4g1493 945 CDD gelsolin_S1_like 12 124 - -
Ssu4g1493 945 SMART VILL_6 392 490 IPR007122 GO:0051015
Ssu4g1493 945 SMART VILL_6 252 344 IPR007122 GO:0051015
Ssu4g1493 945 SMART VILL_6 518 594 IPR007122 GO:0051015
Ssu4g1493 945 SMART VILL_6 19 117 IPR007122 GO:0051015
Ssu4g1493 945 SMART VILL_6 595 684 IPR007122 GO:0051015
Ssu4g1493 945 SMART VILL_6 139 234 IPR007122 GO:0051015
Ssu4g1493 945 MobiDBLite consensus disorder prediction 773 889 - -
Ssu4g1493 945 MobiDBLite consensus disorder prediction 736 759 - -
Ssu4g1493 945 CDD gelsolin_S2_like 138 232 - -
Ssu4g1493 945 SUPERFAMILY Actin depolymerizing proteins 600 698 - -
Ssu4g1493 945 Pfam Villin headpiece domain 910 945 IPR003128 GO:0003779|GO:0007010
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1493 Ssu-Chr4 25209055 25219977 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1493 - - gmx:100787208 1678.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1493 4 25209055 25219977 Ssu7g2845 7 59800933 59812327 PCT