Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1474 ATGGGAGAAGCACCAGCATTGCTTGTTGATGACCTGCAGGATGGGGCTCTGAATGGCCTTGAAGTGAAAAATGGAACTTGCAACGCAACTGCTACCGTTGGTGATAAGACGTATGTCATTGGTGGAGCTGATGATGGAACTTTGTCCATTGAAGTTCAAATTTTTGACCCTAATCTTGCAGACTGGGTTCATCCCACTGTGCAGGGCACCAAACCTGGGTTGTGCAAAGGCCTCTCAGCAGTGCCTTTGGAAGACCGAATACTAATTCTTAAGAAGGGTTCTAAGCCAGATCATCGAATATGGTTCCTGGAGGTCGACACCGAATATGTTAGGCAGCAGCGAAAATATTTGGGGACTGAGGTGGTTGCATGGAGTAAAGGTGTGATAGGCAATGCTGAGAAGCCTGTTGTTATTAGTGGTCCTTCTGGTGTAGGTAAAGGAACACTGATATCAATGCTTATGAAGGAATTTCCATCTATGTTTGGTTTTTCTGTGAGCCACACCACCCGAGCTCCAAGAGGTATGGAGAAAGACGGGGTCCATTACCATTTTACTGAGAAGAGTATAATGGAGAAAGAAATCAAAGAGGGAAAGTTTCTTGAGTTTGCTTCTGTCCATGGTAATCTGTATGGCACTAGTGTTGAGGCTGTTGAACTGGTAGCGGATGCAGGGAAAAGATGTATTCTCGATATTGATGTTCAAGGGGCAAGATCTGTGAGGGCTAGTTCTCTTGAAGCCATATTCATCTTTATCTGTCCCCCATCAATGGAGGAGCTGGAGAAGCGCCTTCGTGACCGAGGGACAGAGACTGAGGAACAGATCCTGAAGCGACTACGTAATGCCAAGGCTGAGATTGAGCAAGGGAAATCTTCTCACATATTTGATTTCATCCTATACAATGACAAACTTGAGGAGTGTTATGAGAGACTCAAGAAACTATTGGGACTTGATGGTTTTGTCACTGCTCCACCTAAATCAGGCCCTAGAGAGAGTGATCTACCTATGGACCATTCAGTGTcaaaaattgataacaaaatcaTCACAAACTGCATCTCCTCAGGAGAGAAGGAATCAAAGAATTTGTAA 1086 0.4411 MGEAPALLVDDLQDGALNGLEVKNGTCNATATVGDKTYVIGGADDGTLSIEVQIFDPNLADWVHPTVQGTKPGLCKGLSAVPLEDRILILKKGSKPDHRIWFLEVDTEYVRQQRKYLGTEVVAWSKGVIGNAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRGMEKDGVHYHFTEKSIMEKEIKEGKFLEFASVHGNLYGTSVEAVELVADAGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLRDRGTETEEQILKRLRNAKAEIEQGKSSHIFDFILYNDKLEECYERLKKLLGLDGFVTAPPKSGPRESDLPMDHSVSKIDNKIITNCISSGEKESKNL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1474 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 314 IPR027417 -
Ssu4g1474 361 Gene3D - 129 317 IPR027417 -
Ssu4g1474 361 SUPERFAMILY Galactose oxidase, central domain 25 111 IPR011043 -
Ssu4g1474 361 ProSitePatterns Guanylate kinase-like signature. 168 185 IPR020590 -
Ssu4g1474 361 TIGRFAM guanyl_kin: guanylate kinase 134 314 IPR017665 GO:0004385|GO:0006163
Ssu4g1474 361 PANTHER GUANYLATE KINASE-RELATED 1 325 - -
Ssu4g1474 361 PANTHER TIGHT JUNCTION PROTEIN ZO-3-RELATED 1 325 - -
Ssu4g1474 361 SMART gk_7 132 318 IPR008145 -
Ssu4g1474 361 CDD GMPK 135 311 - -
Ssu4g1474 361 Pfam Guanylate kinase 133 314 IPR008145 -
Ssu4g1474 361 ProSiteProfiles Guanylate kinase-like domain profile. 133 315 IPR008144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1474 Ssu-Chr4 24578499 24580813 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1474 K00942 - gmx:100527163 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1474 4 24578499 24580813 Ssu4g1474 4 24578499 24580813 ECH
Ssu4g1474 4 24578499 24580813 Ssu7g2813 7 58678323 58680213 PCT