Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1460 ATGGCTATTGTAGCAGCGGCTGTGGTGGTGCCATTGGGCCTGCTCTTCTTCGCCTCCGGCCTCCTTGTTAATCTCATTCAGGCGATATGCTATGTCCTTGTGAGGCCGGTGTCGAAGAATTTGTACAGACGGATCAACCGGGTAGTAGCAGAACTGTTGTGGCTGGAGCTTGTATGGCTTATTGATTGGTGGGCAGGAGTTAAGGTCCAAGTATTCACAGATCATGAAACCTTTTGTTTAATGGGTAAAGAGCATGCACTTGTCATAAGCAATCACAGAAGCGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAGCGTTCAGGTTGCCTTGGCAGCACACTTGCTGTGATGAAGAAATCATCAAAGTTTCTGCCGGTCATTGGCTGGTCAATGTGGTTTTCTGAGTATCTTTTTCTGGAGAGAAGTTGGGCCAAGGATGAAAGCATATTAAAGTCAGGCATCCAACGACTGAGTGATTTCCCTCTTCCCTTTTGGTTGGCTCTCTTTGTAGAAGGAACACGCTTTACACAGGCCAAACTATTAGCTGCTCAGGAATATGCAACTTCCACTGGATTGCCTgttcctaaaaatgttttgattcCAAGAACTAAgGGATTTGTTTCTGCAGTAAGTCATATGCGCTCATTTGTTCCTGCCATTTATGATGTAACAGTGGCTATACCTAAGAGTTCCCCTGCTCCTACAATGCTAAGACTCTTCAAGGGACAACCTTCAGTGGTGCATGTTCATATCAAGAGGCATTTGATGAAGGAATTGCCAGAAACTGATGAAGCTGTTGCTCAATGGTGTCGAGACATATTTGTGGCCAAGGATGCTTTGTTAGACAAACATATAGCTGAGGATACTTTTAGTGATCAAGTGCTGCAGGATACTGGTCGACCAATAAAGTCTCTTCTGGTAGTTATATCTTGGGCTTGTCTGGTTGTTGCGGGGTCTGTAAAGTTTTTTCAACGGTCTTCACTACTATCTTCCTGGAAGGGTGTTGCATTTTCAGCTTTTGGTTTGGCAGTTGTTACTGCACTTATGCACATTTTGATTCAATTCTCACAGTCAGAGCGTTCAAACCCTGCCAAGATCGCCCCTGCGAAGTCAAAAAACAAGGTGGAACAACTAGAAGATAGGAATGACAAACAACAGTAG 1164 0.4373 MAIVAAAVVVPLGLLFFASGLLVNLIQAICYVLVRPVSKNLYRRINRVVAELLWLELVWLIDWWAGVKVQVFTDHETFCLMGKEHALVISNHRSDIDWLVGWVSAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERSWAKDESILKSGIQRLSDFPLPFWLALFVEGTRFTQAKLLAAQEYATSTGLPVPKNVLIPRTKGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTMLRLFKGQPSVVHVHIKRHLMKELPETDEAVAQWCRDIFVAKDALLDKHIAEDTFSDQVLQDTGRPIKSLLVVISWACLVVAGSVKFFQRSSLLSSWKGVAFSAFGLAVVTALMHILIQFSQSERSNPAKIAPAKSKNKVEQLEDRNDKQQ 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1460 387 Pfam Acyltransferase 83 228 IPR002123 GO:0016746
Ssu4g1460 387 MobiDBLite consensus disorder prediction 362 387 - -
Ssu4g1460 387 SMART plsc_2 86 208 IPR002123 GO:0016746
Ssu4g1460 387 MobiDBLite consensus disorder prediction 373 387 - -
Ssu4g1460 387 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-LIKE PROTEIN 7 376 - -
Ssu4g1460 387 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 7 376 - -
Ssu4g1460 387 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 75 288 - -
Ssu4g1460 387 CDD LPLAT_LCLAT1-like 62 253 - -
Ssu4g1460 387 Pfam Acyltransferase C-terminus 239 312 IPR032098 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1460 Ssu-Chr4 24316730 24326354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1460 3 375 Miscellaneous Gene Families AT3G57650 76.944 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1460 K13523 - gmx:100792858 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1460 4 24316730 24326354 Ssu4g1460 4 24316730 24326354 ECH
Ssu4g1460 4 24316730 24326354 Ssu7g2800 7 58292360 58308399 PCT