Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1411 ATGTTCATGAAAAGTGTTGTAATAAAATGCACTGATATGTCATGTGCAGGTTGTGTGAAGATGGGAGCTGGTGGCCGAACCTCTGTTCCTCCTGCCAACAGGAAGTCAGAGGCTGACACTGTGAAGCGGGTGCCATTTGAAAAGCCTCCGTTTAGTCTCAGCCAGATCAAGAAGGCCATTCCACCACACTGTTTCCAGCGCTCTGTTCTCCGCTCATTCTCCTATGTCATTTATGACCTCATCATAGCCTTCAGCCTCTATTATGTTGCCACCCACTACTTCCACCACCTTCCTGGTCCTCTCTCTTTCTTGGCGTGGCCAATCTACTGGGCTGTCCAAGGGTGCATCCTAACTGGCGTTTGGGTCATTGCCCATGAGTGTGGCCACCATGCATTCAGTGACTACCAGTTGCTTGATGATATCGTTGGCCTTGTTCTCCACTCTGCTCTACTAGTCCCTTACTTTTCATGGAAATACAGCCATCGCCGCCACCACTCCAACACCGCTTCTCTCGAGCGGGATGAAGTATTTGTGCCAAAGCAGAAGTCCGGTATGAAGTGGTACTCTAAATACCTTAACAATCCACCAGGCAGAGTCCTCACACTTGCCGTCACCCTCGCACTTGGTTGGCCCATGTACTTGGCTTTTAATGTTTCAGGCAGGCCTTATGAAAGGTTTGCTTGCCACTATGACCCTTATGGTCCCATTTACTCTGACCGTGAACgacttcaaatatatatatcagaTGCAGGAGTACTTGCCGTATGCTATGGACTTTTCCGTCTTGTCATAGCCAAAGGGCTTGCCTGGGTGGTGTGTGTTTATGGAGTTCCATTGCTAGTGGTCAATGGATTTTTGGTGTTGATTACATACTTGCAGCATACTCACCCTGCATTGCCGCACTACAATTCCTCTGAGTGGGACTGGTTGAGAGGAGCTTTAGCAACAGTGGATAGAGATTATGGAATCCTGAACAAGGTCTTCCACAATATTACAGACACTCATGTAGCACATCACTTGTTCTCCACAATGCCACATTATCACGCAATGGAGGCCACAAAGGCAATAAAGCCCATTTTGGGAGAGTATTATCGGTTTGACGAGACTCCATTTTTCAAGGCAATGTGGAGAGAGGCAAGAGAGTGTATTTATGTGGAGCCAGATCAATGTACTGAGAACAAAGGTATATTTTGGTACAACAATAAGTTGTGA 1212 0.4645 MFMKSVVIKCTDMSCAGCVKMGAGGRTSVPPANRKSEADTVKRVPFEKPPFSLSQIKKAIPPHCFQRSVLRSFSYVIYDLIIAFSLYYVATHYFHHLPGPLSFLAWPIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLVLHSALLVPYFSWKYSHRRHHSNTASLERDEVFVPKQKSGMKWYSKYLNNPPGRVLTLAVTLALGWPMYLAFNVSGRPYERFACHYDPYGPIYSDRERLQIYISDAGVLAVCYGLFRLVIAKGLAWVVCVYGVPLLVVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFDETPFFKAMWREARECIYVEPDQCTENKGIFWYNNKL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1411 403 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 21 403 - -
Ssu4g1411 403 PANTHER OLEATE HYDROXYLASE FAH12 21 403 - -
Ssu4g1411 403 Pfam Domain of unknown function (DUF3474) 45 86 IPR021863 GO:0016717
Ssu4g1411 403 Pfam Fatty acid desaturase 105 364 IPR005804 GO:0006629
Ssu4g1411 403 CDD Delta12-FADS-like 67 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1411 Ssu-Chr4 23468425 23469636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1411 21 403 Lipid Metabolism Gene Families AT3G12120 76.762 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1411 K10256 - gmx:547815 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1411 4 23468425 23469636 Ssu4g1411 4 23468425 23469636 ECH
Ssu4g1411 4 23468425 23469636 Ssu7g2742 7 56174805 56175956 PCT