Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1405 atgatGGTGAAAGCAATCCATCTTCAGATATGTGGATTGGTTAGTCAACGTTGGAGTTGGAAACCCCGCACAGTCTCATCCTTCTCTTCATTTCCCCCAATTCTATACCCTAACCCTCATTTCAAACTGTTTCCCACCAACACCATCCCTCGCAGGGTTCGATTCGCACCATTTCACGCTTCCTCGTCACCGCTTCCTTCTGTTGGGAATGTTCGAAACATCAAGTTCTGTCAGTGGTGTGGTGGTTCTACGAAGCATGATATTCCTGAAGGGGAAGAAAAATTGAGAGCCATATGTACAGTTTGTGGGAAGATTACGTATCAGAATCCGAAGATGGTAGTTGGCTGCCTCATTGAACATGATAACAAGGTCCTCCTTTGCAAGAGGAGTATTCAACCATCTCATGGCCTTTGGACCCTTCCTGCTGGTTATTTGGAAATTGGAGAGTCCGCTGTGGAAGGTGCCATCAGGGAAACATGGGAGGAAGCAAATGCAGATGTAGAAGTAGAGAATTTTGATCATGATTATGGAATGTTTGAGGCAGACTTATATGATATTCTTAGCAAAACTGAAGAGGCCCCATTTTTCACCCGGTCCGGAATCATCAGCATGCCAACTTTTTCCACTTGA 630 0.4476 MMVKAIHLQICGLVSQRWSWKPRTVSSFSSFPPILYPNPHFKLFPTNTIPRRVRFAPFHASSSPLPSVGNVRNIKFCQWCGGSTKHDIPEGEEKLRAICTVCGKITYQNPKMVVGCLIEHDNKVLLCKRSIQPSHGLWTLPAGYLEIGESAVEGAIRETWEEANADVEVENFDHDYGMFEADLYDILSKTEEAPFFTRSGIISMPTFST 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1405 209 Pfam Nudix N-terminal 75 108 IPR029401 -
Ssu4g1405 209 Pfam NUDIX domain 113 170 IPR000086 -
Ssu4g1405 209 ProSitePatterns Nudix box signature. 143 164 IPR020084 GO:0016787
Ssu4g1405 209 ProSiteProfiles Nudix hydrolase domain profile. 109 209 IPR000086 -
Ssu4g1405 209 Gene3D - 72 108 - -
Ssu4g1405 209 PANTHER NUDIX HYDROLASE 23 66 169 - -
Ssu4g1405 209 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 109 198 - -
Ssu4g1405 209 PANTHER BNAA03G19740D PROTEIN 66 169 - -
Ssu4g1405 209 SUPERFAMILY Nudix 75 174 IPR015797 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1405 Ssu-Chr4 23394369 23396903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1405 K18453 - gmx:100808417 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1405 4 23394369 23396903 Ssu4g1405 4 23394369 23396903 ECH
Ssu4g1405 4 23394369 23396903 Ssu7g2735 7 55981745 55985624 PCT