Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1395 ATGGCTGATGCCACCAAGTACGTTCCCATCGGGGGTGGGAACGTGGCCACGGACCTCAAGAGCCTTTCCGCCGTTCTCAAAACCAGAAAAACAGTGGCTTTTGCGTACGCTTTCATGCTTGCCTTCGTCGCTTTCACTGTTTTCTTAGCCTTTTCTCCTTCTCCAAACGCTTCCTCCCCCTGGTTCACCAACATATTCTCTTCCACTTCCACATCTCCCTCACACGGTTCGTACAATCCTCAGCTTCCTTCCATTTTCTCGTTCCTCTTCCCAAACACTACTTCACCACCCTCCAATTCCACCGATCCCCTGCACAACGACGCTAACTCCTCTAGATCTACCAATGCTTCTTCTCTATCTGTTAATCCCAACACAACCACACCAACCTCTTTAGATAACCGAACCCAAACCATGGTTACTTTTCATTCCTCCCAAGATGCTGTTCCCGTTCCCAGCACAAACCGGACCACGAATTCTCACGCGCCAAGTTTGGAGGTGAAGTCACCACCCCTTGTCACCAAGGAACCATCCGGTGTCAAAAATCACACCGTTAGTGAAGCTAAAGCTGCGAACACGAATCAAACTACAAATGCTACTGCTCCTGCTACCAATGCTTCAGCGAGTTTCACTCCCCAGAATGTTCCACCTCAGAACACGAGTTTTAATCATAATTCTTCGGTAAAGGCCGATTCCGCGAAGGGTGTTGCGTCGAATGATGATTACGCGGCTTCTCTGGCGAGGAAACAGGGCAACGGGAAGAATCACTCCAAGGGGAAGGATGAGTTGATGGAGTCTCTGATGAAGTGCGATATTTTTGATGGAGAGTGGGTTAAGGATGATTCCTATCCCCTCTATAAGCCAGGTTCTTGCTCTTTCATTGATGAACAGTTCAATTGTATTCGGAATGGAAGGCCTGACAAAGAATATCAGAAATACAAGTGGAAGCCCAAAGGGTGCAGCCTCCCAAgGTTGGATGCGCATCGAATGCTGGAGTTGTTGAGAGGGAAGCGACTGGTTTTTGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCTCTGATTTGCATATTGAGAAATGCTGTGAAAAATAGACACAACGTTTATGAAGCGAATGGGAGGGTTCATTTCAGAGGCGAAGCCtcttattcatttatattcaaaGATTATCACTTCTCCGTGGAGCTTTTTGTGTCCCCATTCTTGGTTCAAGAAGGGGAAATGACTGATAAGAACGGGACAAAGAAGGAAACACTTCGTCTCGATTTAGTTAGTAAATCTTCCTCTGAATATAAAGATGCAGATATTATCATCTTCAACACTGGCCACTGGTGGactcatgataaaacttctaAAGGGCAGGACTATTACCAAGAAGGTAGCCATGTGTATGCTGAACTAAACGTTCTTGAGGCATTCCGAAGAGCTCTAACAACGTGGAGCAGGTGGGTTGATGCCAACATAAATCCATCCAAGACCATAGTCTTCTTCAGAGGCTATTCTGCCTCTCATTTCAGTGGTGGACAATGGAATTCAGGTGGACAATGTGATAGTGAAACTGAGCCAATTGGTAACGAGAAGTACCTAACTGAGTATCCAGATAAGATGAGGGTTTTGGAGAAGGTGCTAAAGAATATGAAAACCCATGTGACCTACCAAAACATCACTAGAATGACGGATTTCCGGAAGGATGGTCATCCCTCGATATACAGGAAGCAAAATCTATCACCTGAGGAAAGAAAATCACCATTGAGATACCAAGACTGCAGTCATTGGTGCCTCCCGGGTGTTCCTGATTTGTGGAATGAAATTATCTATGCTGAACTTCTAATGAGAGAATATCGAAAGCAGCATAAGCAGAAGAGAGCATAG 1869 0.4505 MADATKYVPIGGGNVATDLKSLSAVLKTRKTVAFAYAFMLAFVAFTVFLAFSPSPNASSPWFTNIFSSTSTSPSHGSYNPQLPSIFSFLFPNTTSPPSNSTDPLHNDANSSRSTNASSLSVNPNTTTPTSLDNRTQTMVTFHSSQDAVPVPSTNRTTNSHAPSLEVKSPPLVTKEPSGVKNHTVSEAKAANTNQTTNATAPATNASASFTPQNVPPQNTSFNHNSSVKADSAKGVASNDDYAASLARKQGNGKNHSKGKDELMESLMKCDIFDGEWVKDDSYPLYKPGSCSFIDEQFNCIRNGRPDKEYQKYKWKPKGCSLPRLDAHRMLELLRGKRLVFVGDSLNRNMWESLICILRNAVKNRHNVYEANGRVHFRGEASYSFIFKDYHFSVELFVSPFLVQEGEMTDKNGTKKETLRLDLVSKSSSEYKDADIIIFNTGHWWTHDKTSKGQDYYQEGSHVYAELNVLEAFRRALTTWSRWVDANINPSKTIVFFRGYSASHFSGGQWNSGGQCDSETEPIGNEKYLTEYPDKMRVLEKVLKNMKTHVTYQNITRMTDFRKDGHPSIYRKQNLSPEERKSPLRYQDCSHWCLPGVPDLWNEIIYAELLMREYRKQHKQKRA 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1395 622 MobiDBLite consensus disorder prediction 96 235 - -
Ssu4g1395 622 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 321 606 IPR026057 GO:0016740
Ssu4g1395 622 MobiDBLite consensus disorder prediction 178 232 - -
Ssu4g1395 622 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 19 615 IPR029962 GO:0016413
Ssu4g1395 622 PANTHER PMR5/CAS1P GDSL/SGNH-LIKE ACYL-ESTERASE FAMILY PROTEIN 19 615 - -
Ssu4g1395 622 Pfam PMR5 N terminal Domain 268 319 IPR025846 -
Ssu4g1395 622 MobiDBLite consensus disorder prediction 96 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1395 Ssu-Chr4 23208030 23210633 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1395 - - gmx:100811425 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1395 4 23208030 23210633 Ssu4g1395 4 23208030 23210633 ECH
Ssu4g1395 4 23208030 23210633 Ssu7g2729 7 55544552 55547734 PCT