Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1385 ATGGCATCGAAACACGGTGTAAAATCAAGGAGATTCGGATTGAGTGGCTCAAAAGGTGCTAATTCGCCTTCGTCTTCCACCACATCGTCTTCTAAACAGTTTCAGGAGACATCGGTTGATGGCCAGAGCTCGCCGGCATCTTCGTCGGCTCGAAGTAAGCCGCAGCATTTTAATCCAGAAACTGCAGCTGCATCTTTGGATGCGCAAAGAGCCAAAGAAAATGTCACGGTGACGGTCCGATTTCGGCCTCTGAATCCAAGGGAAATTCGTCAAGGAGAGGAGATTGCTTGGTATGCTGATGGAGAAACTATAGTGCGAAATGAGTATAACCCATCCATAGCATATGCATACGaTCGTGTCTTTGGTCCCACAACCACAACTCGTCAGGTCTATGATGTTGCTGCTCAGCATGTTGTTAGTGGTGCTATGGAGGGCATCAATGGTACAGTATTTGCATATGGAGTAACAAGCAGTGGGAAGACTCATACAATGCATGGTGATCAAAGATCTCCTGGAATCATACCCCTTGCCGTGAAGGATGCTTTTAGCATTATCCAAGAGACTCCCAACCGAGAGTTTCTCCTTCAAGTTTCATACTTGGAAATCTACAATGAGGTTGTTAATGACTTATTAAATCCAGCAGGACAGAACTTAAGAATCAGAGAGGATGCTCAGGGCACCTATGTTGAGGGAATTAAGGAAGAGGTTGTACTGTCCCCTGCTCATGCACTGTCCCTTATTGCAGCTGGAGAAGAGCACAGACATGTTGGGTCCACAAACTTCAACCTACTCAGCAGCAGGAGCCATACAATATTTACCCTGACTATAGAGAGTAGTCCATGTGGTGAAAACAGTGAAGGAGAAGCAGTAACGCTGTCCCAACTGAATCTCATCGATCTAGCAGGTTCTGAGAGCTCAAAAGCTGAAACAACTGGCATGAGAAGGAGAGAAGGATCTTATATCAATAAAAGTCTTCTAACTCTTGGAACTgttatttcaaaattgactGAAGATAAAGCTAGTCACATACCTTATAGGGATTCCAAATTGACTAGAGTACTTCAGTCTTCGCTCAGTGGTCATGGACGTGTTTCTCTTATTTGCACTGTAACCCCTTCATCAAGTAGTACTGAAGAGACACATAATACATTGAAGTTTGCTCACCGGGCAAAGTACATTGAAATACGAGCAGCACAAAACAAGATAATTGATGAGAAGTCACTTATCAAGAAGTACCAACAAGAGATTCAATGCTTAAAGGAAGAATTGGAACAATTAAAGAGAGGTATCGTCACAATTCAACCAAAAGATACCGGGGATGATGACATTGAACTCCTAAAACAAAAGTTAGAAGATGGTCAAGTTAAGTTGCAATCCAGATtggaacaagaagaagaagctaaagGTGCTTTGCTAGGCAGAATTCAACGGTTGACTAAGTTGATTTTGGTCTCCACAAAAGCATCACCGTCAACAAGATTTCCTAACAGACCTGGTCCTCGTAGAAGACATTCCTTTGGGGAAGAAGAGCTGGCATACCTTCCATACAAAAGACGGGATTTAATCGTAGACGAGGAAAATATTGATTTGTATGTTAATCTGGAGGGAAATGCTGCAACAGCTGATGATTCTTTTAAGGGcgagaaaaagatgaagaaacaTGGAATACTAAATTGGTTGAAGTTACGTAAACGAGATAGTGCCTTGACAGGCACAAGTGATAAATCCAGTGGAGCAAAATCTACTAGCACACCTTCTACACCTCAAGCAGAAAGTGGTAATCATGCGGAGTCCAGactttctcattctcaacctGCAGAAAGCTCTCCCTCTGCTGATCTTGCATCAGAAGCAAGAGAGGATAAATCTATTCAAGAGGATAGTTTATTGGGACAAGAAACTCCTTTGACAAGCATCAAATCAGTTGATCAGATTGATCTCTTGAGGGAGCAGCACAAGATTTTATCTGGAGAAGTGGCACTTCATTCAAGTGCTTTGAAGAGGCTGTCTGATGAAGCAACAAGAAATCCTCAGAATGATCAAATTCATGTGGAGATGAAAAGGTTGAAAGATGAAATTACGGCAAAGAGTGAGCAAATAGATTTTCTGGAAAAGcaaatttctaattctttcATTGCTTCAGATAAGACAGAACAGTCAGGAGCATTGCAGCAGACTGTTGCTGAGCTGATGGCACAATTAAACGAGAAATCCTTTGAACTTGAGGTCAAAGCAGCAGATAACCGCATAATTCAAGAACAGCTTAATCAGAAGATTTGTGAATGTGAAAGCCAGCAAGAAGAAATTGCCTCTCTGAAACAGCAACTTGCAGATGCATTGGAGTTGAGAAATTTCAGCCCTGTAGTCGATCATTCACAAAATTTCTTTGTAACCAAAGACTATTTTGGTGAACTTCACCTTGGCAAGGGGAATGTGATGATAAACAAGACCAATGAAGGGATTCATTTGCAAGCtcagATAAGTGAGATAGAAGAGCTGAAGCAGAGGGTGGCAGAACTAACAGAATCAAAGGAGCAGTTAGAATTTAGAAATCAGAAACTGGCAGAAGAGAGTTCATATGCTAAAGGGCTTGCTTCAGCTGCTGCTGTTGAGCTTAAGGCACTGTCAGAAGAAGTTGCCAAACTCATGACCCAGAATGAGAGACTAGCTGCTGAGCTATCCGCATCCAAGAATTCACACACTGAACGTAGAACTAGTGGCACAGTCCAAAATGGACGAAGGGAAAGTCATGTTAGACTTAGACGAAATGATCAGGGTGGATCAAACTCCAATATCAAGAGAGAATTAGCCTTGAGCAAAGAAAGGGAACTTTCATACGAAGCTGCCCTTTTAGAGAAAGATCAGAAAGAGGCCGAACTTCAAAGAAATATTGAGGAGTCAAAGCAAAGAGAAGCATACCTGGAAAATGAACTTGCCAACATGTGGGTCCTTGTGGCAAAGCTAAAAAAGTCACAAGGAGCTGAAACTGATGTTTCAGGGTCGACTAGAGAGAGTTTGCAGTTGGATGGTTTTGACGTTTGA 3042 0.4103 MASKHGVKSRRFGLSGSKGANSPSSSTTSSSKQFQETSVDGQSSPASSSARSKPQHFNPETAAASLDAQRAKENVTVTVRFRPLNPREIRQGEEIAWYADGETIVRNEYNPSIAYAYDRVFGPTTTTRQVYDVAAQHVVSGAMEGINGTVFAYGVTSSGKTHTMHGDQRSPGIIPLAVKDAFSIIQETPNREFLLQVSYLEIYNEVVNDLLNPAGQNLRIREDAQGTYVEGIKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSEGEAVTLSQLNLIDLAGSESSKAETTGMRRREGSYINKSLLTLGTVISKLTEDKASHIPYRDSKLTRVLQSSLSGHGRVSLICTVTPSSSSTEETHNTLKFAHRAKYIEIRAAQNKIIDEKSLIKKYQQEIQCLKEELEQLKRGIVTIQPKDTGDDDIELLKQKLEDGQVKLQSRLEQEEEAKGALLGRIQRLTKLILVSTKASPSTRFPNRPGPRRRHSFGEEELAYLPYKRRDLIVDEENIDLYVNLEGNAATADDSFKGEKKMKKHGILNWLKLRKRDSALTGTSDKSSGAKSTSTPSTPQAESGNHAESRLSHSQPAESSPSADLASEAREDKSIQEDSLLGQETPLTSIKSVDQIDLLREQHKILSGEVALHSSALKRLSDEATRNPQNDQIHVEMKRLKDEITAKSEQIDFLEKQISNSFIASDKTEQSGALQQTVAELMAQLNEKSFELEVKAADNRIIQEQLNQKICECESQQEEIASLKQQLADALELRNFSPVVDHSQNFFVTKDYFGELHLGKGNVMINKTNEGIHLQAQISEIEELKQRVAELTESKEQLEFRNQKLAEESSYAKGLASAAAVELKALSEEVAKLMTQNERLAAELSASKNSHTERRTSGTVQNGRRESHVRLRRNDQGGSNSNIKRELALSKERELSYEAALLEKDQKEAELQRNIEESKQREAYLENELANMWVLVAKLKKSQGAETDVSGSTRESLQLDGFDV 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1385 1013 Coils Coil 447 467 - -
Ssu4g1385 1013 ProSiteProfiles Kinesin motor domain profile. 74 393 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1385 1013 MobiDBLite consensus disorder prediction 1 57 - -
Ssu4g1385 1013 Coils Coil 823 857 - -
Ssu4g1385 1013 MobiDBLite consensus disorder prediction 892 906 - -
Ssu4g1385 1013 MobiDBLite consensus disorder prediction 571 611 - -
Ssu4g1385 1013 Coils Coil 946 977 - -
Ssu4g1385 1013 MobiDBLite consensus disorder prediction 992 1013 - -
Ssu4g1385 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 428 IPR027417 -
Ssu4g1385 1013 MobiDBLite consensus disorder prediction 568 632 - -
Ssu4g1385 1013 MobiDBLite consensus disorder prediction 907 922 - -
Ssu4g1385 1013 PANTHER KINESIN-LIKE PROTEIN KIN-7K, CHLOROPLASTIC ISOFORM X1 49 1005 - -
Ssu4g1385 1013 Coils Coil 865 892 - -
Ssu4g1385 1013 Pfam Kinesin motor domain 80 393 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1385 1013 Coils Coil 679 706 - -
Ssu4g1385 1013 CDD KISc_CENP_E 74 393 - -
Ssu4g1385 1013 PRINTS Kinesin heavy chain signature 343 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1385 1013 PRINTS Kinesin heavy chain signature 294 312 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1385 1013 PRINTS Kinesin heavy chain signature 145 166 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1385 1013 PRINTS Kinesin heavy chain signature 259 276 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1385 1013 SMART kinesin_4 72 401 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g1385 1013 PANTHER CENTROMERE PROTEIN E 49 1005 - -
Ssu4g1385 1013 Coils Coil 395 429 - -
Ssu4g1385 1013 Gene3D Kinesin motor domain 64 424 IPR036961 -
Ssu4g1385 1013 ProSitePatterns Kinesin motor domain signature. 293 304 IPR019821 GO:0003777|GO:0005524|GO:0007018
Ssu4g1385 1013 MobiDBLite consensus disorder prediction 15 57 - -
Ssu4g1385 1013 Coils Coil 748 782 - -
Ssu4g1385 1013 MobiDBLite consensus disorder prediction 892 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1385 Ssu-Chr4 23035171 23054110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1385 1 724 Miscellaneous Gene Families AT5G06670 68.861 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1385 K11498 - gmx:100815027 1795.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1385 4 23035171 23054110 Ssu4g1385 4 23035171 23054110 ECH
Ssu4g1385 4 23035171 23054110 Ssu7g2723 7 55195179 55239548 PCT