Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1365 ATGGCGATCAAAGAAGATGTGGAGGAAGGCATGCAGAAAGGAATCAGAGAGCCACTGGTGGGGGAACAGGACCAGCAGCTGGTCCATGCAAGCAAAGGGCATCCATGGATGGTGTACTTTAGTACATTCATTGCAGTCTGTGGTTCTTATGAATTTGGGACTTGTGCTGGATATTCATCTCCCACTCAAGATGCTATCAGGAAGGATCTCAGTCTGTCTTTGGCAGAGTACTCCTTGTTTGGCTCCATCTTGACTTTTGGTGCGATGGTTGGTGCAATAACAAGTGGGCCTATAGCTGATTTTATTGGACGAAAAGGGGCAATGAGAGTGTCAAGTGCTTGCTGTGTCGCAGGGTggcttgttatttatttttctgagGGCCCAGTGCCTTTGGACGTTGGGAGGCTAGCAACAGGATATGGAATGGGAGTTTTTTCATATGTGGTTCCTGTCTTCATAGCTGAAATTGCACCGAAAGAACTCCGAGGGACACTGACTACCTTAAATCAGTTCATGATTTGTGCTGCTGTGTCAGTGTCATTCATAATTGGAAATGTACTTTCATGGAGAGCTTTAGCTTTAACTGGCCTCATTCCCACTGCTGTATTGCTTTTGGGTCTGTTTTTCATTCCGGAGTCTCCTAGATGGCTAGCAAAGAGAGGATGTAAAAAAGATTTTGAGGCGTCGCTGCAGATACTTCGTGGCAAAGATGCTGATATATCTGAGGAGGCAGCGGAAATTCAGGATTATATAGCTACTTTGGAGCGGCTCCCAAAATCCAGGGTGCTGGAATTGTTTCAAAGAAGATATTTGCGCTCAGTCACTATTGGAATAGGCCTTATGGTCTGCCAGCAGTTTGGGGGAATCAATGGAATTTGCTTTTATACCAGCAGTATTTTTGAGCAAGCAGGATTTTCTCCCACCATTGGGACCATAATATATGCTTGCCTTCAGATTGTGATCACAGGTCTTGGAGCAGCCTTAATAGATAAAGCTGGCAGGAAGCCCCTACTTCTATTATCCGGATCGGGATTAGTTGCAGGATGTCTGTTTGCAGCAGTTGCATTCTATCTCAAGGTTCACGAAGTGGGTGTTGCAGCTGTCCCAGCACTTGCCGTAACAGGCATACTGGTCTACATAGGATCATTTTCAATAGGAATGGGAGCAATTCCATGGGTTGTGATGTCCGAGATATTTCCTGTCAATATTAAAGGGCTAGCAGGAAGTATGGCCACATTAACGAACTGGTTTGGTGCATGGTTATGTTCCTATACTTTCAACTTCCTCATGAGCTGGAGCTCCtatgGTACCTTTATTCTTTATGCAGCAATCAATGCACTggctatattatttataattgttgcGGTGCCAGAAACCAAGGGGAAAAGCTTGGAACAATTACAAGCAGCCATTAATTCATAG 1422 0.436 MAIKEDVEEGMQKGIREPLVGEQDQQLVHASKGHPWMVYFSTFIAVCGSYEFGTCAGYSSPTQDAIRKDLSLSLAEYSLFGSILTFGAMVGAITSGPIADFIGRKGAMRVSSACCVAGWLVIYFSEGPVPLDVGRLATGYGMGVFSYVVPVFIAEIAPKELRGTLTTLNQFMICAAVSVSFIIGNVLSWRALALTGLIPTAVLLLGLFFIPESPRWLAKRGCKKDFEASLQILRGKDADISEEAAEIQDYIATLERLPKSRVLELFQRRYLRSVTIGIGLMVCQQFGGINGICFYTSSIFEQAGFSPTIGTIIYACLQIVITGLGAALIDKAGRKPLLLLSGSGLVAGCLFAAVAFYLKVHEVGVAAVPALAVTGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGLAGSMATLTNWFGAWLCSYTFNFLMSWSSYGTFILYAAINALAILFIIVAVPETKGKSLEQLQAAINS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1365 473 PANTHER - 34 472 - -
Ssu4g1365 473 PRINTS Sugar transporter signature 373 394 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu4g1365 473 PRINTS Sugar transporter signature 396 408 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu4g1365 473 PRINTS Sugar transporter signature 132 151 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu4g1365 473 PRINTS Sugar transporter signature 284 294 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu4g1365 473 TIGRFAM SP: MFS transporter, sugar porter (SP) family 35 466 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu4g1365 473 Pfam Sugar (and other) transporter 49 469 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu4g1365 473 CDD MFS_GLUT6_8_Class3_like 39 466 IPR044775 GO:0008643|GO:0051119
Ssu4g1365 473 PANTHER SUGAR TRANSPORTER ERD6-LIKE 7 34 472 - -
Ssu4g1365 473 ProSitePatterns Sugar transport proteins signature 1. 95 112 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu4g1365 473 ProSiteProfiles Major facilitator superfamily (MFS) profile. 37 460 IPR020846 GO:0022857
Ssu4g1365 473 ProSitePatterns Sugar transport proteins signature 1. 325 342 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu4g1365 473 Gene3D MFS general substrate transporter like domains 31 473 IPR036259 -
Ssu4g1365 473 SUPERFAMILY MFS general substrate transporter 33 467 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1365 Ssu-Chr4 22504713 22509267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1365 1 472 Organic Solute Cotransporters AT5G18840 58.455 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1365 K03444 - gmx:100785248 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1365 4 22504713 22509267 Ssu4g0322 4 5354105 5358520 ECH
Ssu4g1365 4 22504713 22509267 Ssu4g1365 4 22504713 22509267 ECH