Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0322 ATGGATAACAAAACCAGCGAACCAAGCCATTTTTCAGCTCCTCTCCTCCCCACAAGTTACGGTGCCAATGATGGCGTTGACTCTGACGAAAAGAGCCATAGCGGAGCTTCTTCCATACCAACCACTCTTATACTCACCACCCTCGTCGCTGTTTTTGGTTCTTACGTTTTTGGCTCTGCTATTGGGTATTCATCACCTACTCAATCTGGAATCATGCGTGACCTCAATCTCGGCGTGGCGCAGTACTCAATTTTTGGTTCGATATTGACGATTGGAGCGATGATTGGTGCCGTTGTGAGTGGTAGAATAGCAGATTACGCAGGTCGACGAGTTGCCATGGGATTCTCCGAGGTTTTCTGCATCTTGGGATGGCTTGCCATAACATTCTCAAAGGTTGCTTGGTGGCTTTATGTTGGAAGACTGTTGATAGGATGTGGGATTGGCCTTCTATCTTATGTGGTACCTGTTTATGTAGCAGAAATAACACCCAAGAATTTTCGAGGGGCATTCACTGCAGTTCATCAGTTAATGATTTGTTGTGGGATGTCATTAACTTATCTTATTGGAGCATATGTGAATTGGCGGATCTTGGCTCTAATAGGAACTATTCCGTGTCTTGTGCAGCTTCTGAGTCTTCCCTTCATCCCTGATTCTCCTAGGTGGCTGGCTAAGGTCGGTTGCTTGAAAGAGAGTGATTCTGCTTTACAGCACCTCAGGGGGAAGAATGCTGATGTTTATCAAGAGGCGACAGAAATCAGAGATTATACAGAAGCCTTTCAGCGGCAAACAGAAGCTAGCTTCATCGGCTTATTTCAAATGCAGTATTTGAAGTCACTTACCGTAGGAGTCGGCTTGATGATATTGCAGCAGTTTGGAGGGATTAATGGCATTGTTTTCTATGcaaattctatatttatctCTGCTGGGTTTTCAGAAAGTGTTGGAACAATAGCAATGGTTGCCGTTAAGATTCCAATGACGACTTTAGGAGTACTTTTAATGGATAAATCTGGAAGACGACCACTTTTGCTGGTGTCTGCAGTGGGAACATGCTTAGGATGCTTCCTGGCAGCCTTGTCATTCGTCTTGCAGGACTTGCATAAATGGAAAGGAGTTAGTCCCATTATGGCGCTAGTGGGTGTACTGGTATACATGGGATCTTACTCGATAGGCATTGGAGCAATTCCCTGGGTTATAATGTCTGAGaTATTTCCCATCAACGTGAAGGGCTCTGCTGGAAGCCTTGTGACTTTGGTTAGCTGGTTGTGTTCTTGGATTGTATCATATGCTTTTAACTTCCTCATGAGTTGGAGTTCAGCAGGAACTTTCTTCATGTTCTCTTGCATATGCGGCTTCACTGTGCTATTCGTAGCAAAACTAGTGCCAGAGACCAAGGGGCGTACACTAGAAGAAATTCAAGCTTCTTTGAATTCATATTCTTCAACGAGATGA 1452 0.4408 MDNKTSEPSHFSAPLLPTSYGANDGVDSDEKSHSGASSIPTTLILTTLVAVFGSYVFGSAIGYSSPTQSGIMRDLNLGVAQYSIFGSILTIGAMIGAVVSGRIADYAGRRVAMGFSEVFCILGWLAITFSKVAWWLYVGRLLIGCGIGLLSYVVPVYVAEITPKNFRGAFTAVHQLMICCGMSLTYLIGAYVNWRILALIGTIPCLVQLLSLPFIPDSPRWLAKVGCLKESDSALQHLRGKNADVYQEATEIRDYTEAFQRQTEASFIGLFQMQYLKSLTVGVGLMILQQFGGINGIVFYANSIFISAGFSESVGTIAMVAVKIPMTTLGVLLMDKSGRRPLLLVSAVGTCLGCFLAALSFVLQDLHKWKGVSPIMALVGVLVYMGSYSIGIGAIPWVIMSEIFPINVKGSAGSLVTLVSWLCSWIVSYAFNFLMSWSSAGTFFMFSCICGFTVLFVAKLVPETKGRTLEEIQASLNSYSSTR 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0322 483 Pfam Sugar (and other) transporter 47 474 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu4g0322 483 SUPERFAMILY MFS general substrate transporter 38 473 IPR036259 -
Ssu4g0322 483 CDD MFS_GLUT6_8_Class3_like 44 471 IPR044775 GO:0008643|GO:0051119
Ssu4g0322 483 PANTHER GENERAL SUBSTRATE TRANSPORTER 21 479 - -
Ssu4g0322 483 PANTHER - 21 479 - -
Ssu4g0322 483 TIGRFAM SP: MFS transporter, sugar porter (SP) family 45 472 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu4g0322 483 MobiDBLite consensus disorder prediction 1 37 - -
Ssu4g0322 483 ProSitePatterns Sugar transport proteins signature 1. 100 116 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu4g0322 483 Gene3D MFS general substrate transporter like domains 35 478 IPR036259 -
Ssu4g0322 483 ProSiteProfiles Major facilitator superfamily (MFS) profile. 46 465 IPR020846 GO:0022857
Ssu4g0322 483 PRINTS Sugar transporter signature 401 413 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu4g0322 483 PRINTS Sugar transporter signature 137 156 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu4g0322 483 PRINTS Sugar transporter signature 378 399 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu4g0322 483 PRINTS Sugar transporter signature 54 64 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu4g0322 483 PRINTS Sugar transporter signature 289 299 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0322 Ssu-Chr4 5354105 5358520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0322 29 407 Organic Solute Cotransporters AT1G54730 65.172 8.07e-173 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0322 K03444 - gmx:100817150 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1365 4 22504713 22509267 Ssu4g0322 4 5354105 5358520 ECH
Ssu4g0322 4 5354105 5358520 Ssu4g0322 4 5354105 5358520 ECH